Red leaf blotch (RLB) of almond, caused by Polystigma amygdalinum, is an important foliar disease of this nut tree in the Mediterranean basin and especially in Spain. In recent years, the control of this disease has become a key factor in the management of Spanish almond orchards. The management of RLB is not easy due to intrinsic factors of the disease (e.g., long infection and latency periods) and the low number of registered fungicides in this country. From 2015 to 2019, different field trials were conducted in the Lleida region, NE Spain, to evaluate the efficacy of several fungicide products and of application strategies to control this disease. Systemic fungicides, which included fluopyram, trifloxystrobin, and mixtures of fluopyram + trifloxystrobin and pyraclostrobin + boscalid, performed better than contact and penetrant products and showed up to 90% control against RLB. However, the efficacy of the tested fungicides varied depending on the year. In terms of application strategies, when fungicide applications were conducted following specific meteorological conditions (after 15 days from >15 mm rainfalls with ≈10–15 °C as the minimum average temperature), their efficacy was comparable to that of calendar-based treatments (every 14, 21, or 31 days from petal fall) but with fewer applications (depending on the year, 2–4 applications as compared with 5–9 for calendar treatments).

The dynamics of airborne ascospores and disease progress of red leaf blotch (RLB) of almond, caused by Polystigma amygdalinum, and their correlations with weather variables were studied from 2019 to 2021 in two almond orchards located in Lleida, NE Spain. Airborne ascospores were detected and quantified by real‐time qPCR using species‐specific primers for P. amygdalinum. Ascospores were detected mainly from April to June, with a high variability between the yearly cumulative concentrations. Positive significant correlations were found between the weekly proportion of airborne ascospores and the number of wet and mild days—either combined or separated— accumulated rainfall, number of rainy days, accumulated low temperatures on wet days, and mean and maximum relative humidity. In contrast, several thermal variables (maximum temperature, VPD, and number of warm days) were negatively correlated with ascospore catches. Positive significant correlations were found between the cumulative proportion of ascospores and RLB incidence and severity. Weekly variations in RLB incidence and severity showed significant positive correlations with the number of warm days while negative with the number of mild days. Severity was also positively correlated with several thermal variables (mean, maximum, and minimum temperature, and VPD), and negatively correlated with the number of cold days and wet and mild days. Stronger correlations were generally found with ascospore catches or disease progress when using concurrent weekly weather data. Gompertz, monomolecular, and logistic growth models were evaluated to describe RLB disease progress.

Red leaf blotch (RLB) of almond, caused by the ascomycete Polystigma amygdalinum, is a severe foliar disease endemic in the Mediterranean Basin and Middle East. Airborne ascospores of P. amygdalinum were monitored from 2019 to 2021 in two almond orchards in Lleida, Spain, and a Bayesian beta regression was used to model its seasonal dynamics. The selected model incorporated accumulated degree-days (ADD), ADD considering both vapor pressure deficit and rainfall as fixed effects, and a random effect for the year and location. The performance of the model was evaluated in 2022 to optimize RLB fungicide programs by comparing the use of model predictions and action thresholds with the standard program. Two variants were additionally considered in each program to set the frequency between applications, based on (i) a fixed frequency of 21 days or (ii) specific meteorological criteria (spraying within 7 days after rainfalls greater than 10 mm, with daily mean temperatures between 10 and 20°C, and with a minimum frequency of 21 days between applications). Programs were evaluated in terms of RLB incidence and number of applications. The program based on the model with periodic fungicide applications was similarly effective as the standard program, resulting only in a 2.6% higher RLB incidence but with fewer applications (three to four, compared with seven in the standard program). When setting the frequency between applications by using the meteorological criteria, a higher reduction in the number of applications (two to three) was observed, while RLB incidence increased by roughly 16% in both programs. Therefore, the model developed in this study may represent a valuable tool toward a more sustainable fungicide schedule for the control of almond RLB in northeast Spain.

The authors wish to add the following statement to the Acknowledgments section of article

Red leaf blotch of almond, a severe foliar disease caused by the hemibiotrophic ascomycete Polystigma amygdalinum, is an expanding threat to almond production. To understand the molecular basis of cultivar tolerance, we used dual RNA-seq and gene co-expression network analysis to compare the transcriptomic landscapes of ’Tarraco’ (susceptible) and ’Mardía’ (tolerant) almond cultivars. Our results reveal contrasting host transcriptomic architectures defining this plant-pathogen interaction. In ’Tarraco’, fungal colonization triggers a massive transcriptomic shift, characterized by the activation of a specialized functional module dominated by a strong upregulation of genes involved in cell wall degradation (e.g., pectin and xylan catabolic processes) and anthocyanin biosynthesis. In contrast, the tolerance response in ’Mardía’ is defined by a constitutively primed baseline and, with only a few genes upregulated upon infection, primarily linked to chitin and lignin metabolism. Comparative analysis of asymptomatic tissues identified intrinsic defense signatures in ’Mardía’ anchored by protein homeostasis and signaling machinery, while ’Tarraco’ prioritized translation-associated pathways. Cross-referencing these findings with a previously identified tolerance Quantitative Trait Locus on Linkage Group 3 identified a subset of high-priority positional candidate genes, including a receptor-like kinase FERONIA that was constitutively upregulated in the tolerant genotype. Furthermore, a de novo assembly of the fungal transcriptome revealed a candidate effector repertoire of 2,104 proteins, providing a first look into the pathogen’s molecular arsenal during colonization of the susceptible host.