Climate change may both exacerbate the vulnerabilities and open up new opportunities for farming in the Northeastern USA. Among the opportunities are double-cropping and new crop options that may come with warmer temperatures and a longer frost-free period. However, prolonged periods of spring rains in recent years have delayed planting and offset the potentially beneficial longer frost-free period. Water management will be a serious challenge for Northeast farmers in the future, with projections for increased frequency of heavy rainfall events, as well as projections for more frequent summer water deficits than this historically humid region has experienced in the past. Adaptations to increase resilience to such changes include expanded irrigation capacity, modernized water monitoring and irrigation scheduling, farm drainage systems that collect excess rain into ponds for use as a water source during dry periods, and improved soil water holding capacity and drainage. Among the greatest vulnerabilities over the next several decades for the economically important perennial fruit crop industry of the region is an extended period of spring frost risk associated with warmer winter and early spring temperatures. Improved real-time frost warning systems, careful site selection for new plantings, and use of misting, wind machine, or other frost protection measures will be important adaptation strategies. Increased weed and pest pressure associated with longer growing seasons and warmer winters is another increasingly important challenge. Pro-active development of non-chemical control strategies, improved regional monitoring, and rapid-response plans for targeted control of invasive weeds and pests will be necessary.

Located on a 20-ha commercial apple ( Malus domestica Borkh.) orchard in the Yakima Valley, Washington, a 1.7-ha study area was planted with apple trees in 1994 in a randomized complete block design with four replications of three treatments: organic (ORG), conventional (CON), and integrated (INT). Soil classification, rootstock, cultivar, plant age, and all other conditions except management were the same on all plots. In years 9 (2002) and 10 (2003) of this study, we compared the orchard productivity and fruit quality of `Galaxy Gala' apples. Measurements of crop yield, yield efficiency, crop load, average fruit weight, tree growth, color grades, and weight distributions of marketable fruit, percentages of unmarketable fruit, classifications of unmarketable fruit, as well as leaf, fruit, and soil mineral concentrations, were used to evaluate orchard productivity. Apple fruit quality was assessed at harvest and after refrigerated (0 to 1 °C) storage for three months in regular atmosphere (ambient oxygen levels) and for three and six months in controlled atmosphere (1.5% to 2% oxygen). Fruit internal ethylene concentrations and evolution, fruit respiration, flesh firmness, soluble solids concentration (SSC), titratable acidity (TA), purgeable volatile production, sensory panels, and total antioxidant activity (TAA) were used to evaluate fruit quality. ORG crop yields were two-thirds of the CON and about half of the INT yields in 2002, but about one-third greater than either system in 2003. High ORG yields in 2003 resulted in smaller ORG fruit. Inconsistent ORG yields were probably the result of several factors, including unsatisfactory crop load management, higher pest and weed pressures, lower leaf and fruit tissue nitrogen, and deficient leaf tissue zinc concentrations. Despite production difficulties, ORG apples had 6 to 10 N higher flesh firmness than CON, and 4 to 7 N higher than INT apples, for similar-sized fruit. Consumer panels tended to rate ORG and INT apples to have equal or better overall acceptability, firmness, and texture than CON apples. Neither laboratory measurements nor sensory evaluations detected differences in SSC, TA, or the SSC to TA ratio. Consumers were unable to discern the higher concentrations of flavor volatiles found in CON apples. For a 200 g fruit, ORG apples contained 10% to 15% more TAA than CON apples and 8% to 25% more TAA than INT apples. Across most parameters measured in this study, the CON and INT farm management systems were more similar to each other than either was to the ORG system. The production challenges associated with low-input organic apple farming systems are discussed. Despite limited technologies and products for organic apple production, the ORG apples in our study showed improvements in some fruit quality attributes that could aid their marketability.

The fermentation of apple juice into hard cider is a complex biochemical process that transforms sugars into alcohols by yeast, of which Saccharomyces cerevisiae is the most widely used species. Among many factors, hydrogen sulfide (H₂S) production by yeast during cider fermentation is affected by yeast strain and yeast assimilable nitrogen (YAN) concentration in the apple juice. In this study, we investigated the regulatory mechanism of YAN concentration on S. cerevisiae H₂S formation. Two S. cerevisiae strains, UCD522 (a H₂S-producing strain) and UCD932 (a non-H₂S-producing strain), were used to ferment apple juice that had Low, Intermediate, and High diammonium phosphate (DAP) supplementation. Cider samples were collected 24 and 72 h after yeast inoculation. Using RNA-Seq, differentially expressed genes (DEGs) identification and annotation, Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, we found that gene expression was dependent on yeast strain, fermentation duration, H₂S formation, and the interaction of these three factors. For UCD522, under the three DAP treatments, a total of 30 specific GO terms were identified. Of the 18 identified KEGG pathways, “Sulfur metabolism,” “Glycine, serine and threonine metabolism,” and “Biosynthesis of amino acids” were significantly enriched. Both GO and KEGG analyses revealed that the “Sulfate Reduction Sequence (SRS) pathway” was significantly enriched. We also found a complex relationship between H₂S production and stress response genes. For UCD522, we confirm that there is a non-linear relationship between YAN and H₂S production, with the Low and Intermediate treatments having greater H₂S production than the High treatment. By integrating results obtained through the transcriptomic analysis with yeast physiological data, we present a mechanistic view into the H₂S production by yeast as a result of different concentrations of YAN during cider fermentation.

Sustainable practices are key to the improvement of soil fertility and quality in apple ( Malus × domestica Borkh.) orchards. Rootstock genotype and fertilizer inputs can alter soil biology, as well as aboveground traits including nutrient acquisition. In this study, a factorial design was used to assess the interaction between two apple rootstocks, ‘Geneva 41’ (‘G.41’) and ‘Malling 9’ (‘M.9’) with four fertilizer treatments [chicken‐litter compost, yardwaste compost, fertigation using Ca(NO ₃ ) ₂ , and an unamended control]. The bacterial community in the rhizosphere was assessed for its impact on both plant and soil properties for each rootstock × fertilizer treatment combination. The bacterial community was dominated by Acidobacteria, Proteobacteria, and Planctomycetes, but Verrucomicrobia and Chloroflexi were the most responsive to the fertilizer treatments. The chicken litter and yardwaste treatments had a greater effect on bacterial community structure than the control. Yardwaste, in particular, was associated with increased relative abundance of Chloroflexi, which was correlated with soil nutrient concentrations. Malling 9 had a greater bacterial diversity than G.41, but the rootstock treatment had no independent effect on the rhizosphere community structure. There was, however, a strong interaction between the rootstock and fertilizer treatments. Carbon cycling was the most prominent functional change associated with the soil bacterial community. These results suggest that compost amendments have a more positive effect on soil bacterial activity and nutrient availability than Ca(NO ₃ ) ₂ . Our work shows that waste‐stream amendments can lead to multiple positive responses, such as increasing aboveground tree biomass, thus potentially improving orchard productivity.