Dam construction and longitudinal river habitat fragmentation disrupt important life histories and movement of aquatic species. This is especially true for Oncorhynchus mykiss that exhibits both migratory (steelhead) and non-migratory (resident rainbow) forms. While the negative effects of dams on salmonids have been extensively documented, few studies have had the opportunity to compare population genetic diversity and structure prior to and following dam removal. Here we examine the impacts of the removal of two dams on the Elwha River on the population genetics of O. mykiss. Genetic data were produced from >1200 samples collected prior to dam removal from both life history forms, and post-dam removal from steelhead. We identified three genetic clusters prior to dam removal primarily explained by isolation due to dams and natural barriers. Following dam removal, genetic structure decreased and admixture increased. Despite large O. mykiss population declines after dam construction, we did not detect shifts in population genetic diversity or allele frequencies of loci putatively involved in migratory phenotypic variation. Steelhead descendants from formerly below and above dammed populations recolonized the river rapidly after dam removal, suggesting that dam construction did not significantly reduce genetic diversity underlying O. mykiss life history strategies. These results have significant evolutionary implications for the conservation of migratory adaptive potential in O. mykiss populations above current anthropogenic barriers.

Understanding the factors influencing the success of juvenile Pacific salmon Oncorhynchus spp. in newly colonized habitats is essential to their recovery in large areas across the West Coast of the United States and Canada. We studied biotic and abiotic factors associated with survival during the early stages of colonization and population establishment of juvenile coho salmon O. kisutch in Rock Creek, a tributary of the upper Cedar River in the Lake Washington basin of Puget Sound, Washington. The stream was occupied by resident fishes (e.g., rainbow trout O. mykiss, cutthroat trout O. clarkii, speckled dace Rhinichthys osculus, and several sculpins Cottus spp.), but adult coho salmon and other anadromous fishes had been excluded by a dam from 1901 until fish ladder installation in 2003. We defined logistic regression models and used an information‐theoretic approach to predict apparent survival with various combinations of individual fish condition, location competition, and local habitat quality. The best‐approximating models included measures of brood year, body size, habitat, and migration timing. Survival was positively associated with body size and habitat quality and negatively associated with competition. Survival from late summer to smolt migration varied among years (mean ± SD = 27 ± 11%) and was significantly higher within Rock Creek (73 ± 11%) than during seaward migration in the Cedar River and Lake Washington (38 ± 14%). Juvenile coho salmon established a population and outnumbered resident salmonid species by 40% in the lower 2 km of Rock Creek within 5 years of colonization. Overall, the results revealed the linkage between the colonization success of juvenile coho salmon and the biotic features and habitat quality in a newly accessible environment during the stream‐rearing phase of their life history.

We measured food availability and diet composition of juvenile salmonids over multiple years and seasons before and during the world’s largest dam removal on the Elwha River, Washington State. We conducted these measurements over three sediment-impacted sections (the estuary and two sections of the river downstream of each dam) and compared these to data collected from mainstem tributaries not directly affected by the massive amount of sediment released from the reservoirs. We found that sediment impacts from dam removal significantly reduced invertebrate prey availability, but juvenile salmon adjusted their foraging so that the amount of energy in diets was similar before and during dam removal. This general pattern was seen in both river and estuary habitats, although the mechanisms driving the change and the response differed between habitats. In the estuary, the dietary shifts were related to changes in invertebrate assemblages following a hydrological transition from brackish to freshwater caused by sediment deposition at the river’s mouth. The loss of brackish invertebrate species caused fish to increase piscivory and rely on new prey sources such as plankton. In the river, energy provided to fish by Ephemeroptera, Plecoptera, and Trichoptera taxa before dam removal was replaced first by terrestrial invertebrates, and then by sediment-tolerant taxa such as Chironomidae. The results of our study are consistent with many others that have shown sharp declines in invertebrate density during dam removal. Our study further shows how those changes can move through the food web and affect fish diet composition, selectivity, and energy availability. As we move further along the dam removal response trajectory, we hypothesize that food web complexity will continue to increase as annual sediment load now approaches natural background levels, anadromous fish have recolonized the majority of the watershed between and above the former dams, and revegetation and microhabitats continue to develop in the estuary.