Cultivars with efficient root systems play a major role in enhancing resource use efficiency, particularly water absorption, and thus in drought tolerance. In this study, a diverse wheat association panel of 136 wheat accessions including mini core subset was genotyped using Axiom 35k Breeders’ Array to identify genomic regions associated with seedling stage root architecture and shoot traits using multi-locus genome-wide association studies (ML-GWAS). The association panel revealed a wide variation of 1.5- to 50-fold and were grouped into six clusters based on 15 traits. Six different ML-GWAS models revealed 456 significant quantitative trait nucleotides (QTNs) for various traits with phenotypic variance in the range of 0.12–38.60%. Of these, 87 QTNs were repeatedly detected by two or more models and were considered reliable genomic regions for the respective traits. Among these QTNs, eleven were associated with average diameter and nine each for second order lateral root number (SOLRN), root volume (RV) and root length density (RLD). A total of eleven genomic regions were pleiotropic and each controlled two or three traits. Some important candidate genes such as Formin homology 1, Ubiquitin-like domain superfamily and ATP-dependent 6-phosphofructokinase were identified from the associated genomic regions. The genomic regions/genes identified in this study could potentially be targeted for improving root traits and drought tolerance in wheat.
Identifying a congenially targeted production environment and understanding the effects of genotype by environmental interactions on the adaption of chickpea genotypes is essential for achieving an optimal yield stability. Different models like additive main effect and multiplicative interactions (AMMI 1, AMM2), weighted average absolute scores of BLUPs (WAASB), and genotype plus genotype–environment (GGE) interactions were used to understand their suitability in the precise estimation of variance and their interaction. Our experiment used genotypes that represent the West Asia–North Africa (WANA) region. This trial involved two different sowing dates, two distinct seasons, and three different locations, resulting in a total of 12 environments. Genotype IG 5871(G1) showed a lower heat susceptibility index (HSI) across environments under study. The first four interactions principal component axis (IPCA) explain 93.2% of variations with significant genotype–environment interactions. Considering the AMMI stability value (ASV), the genotypes IG5862(G7), IG5861(G6), ILC239(G40), IG6002(G26), and ILC1932(G39), showing ASV scores of 1.66, 1.80, 2.20, 2.60, and 2.84, respectively, were ranked as the most stable and are comparable to the weighted average absolute scores of BLUPs (WAASB) ranking of genotypes. The which–won–where pattern of genotype plus genotype–environment (GGE) interactions suggested that the target environment consists of one mega environment. IG5866(G10), IG5865(G9), IG5884(G14), and IG5862(G7) displayed higher stability, as they were nearer to the origin. The genotypes that exhibited a superior performance in the tested environments can serve as ideal parental lines for heat-stress tolerance breeding programs. The weighted average absolute scores of BLUPs (WAASB) serve as an ideal tool to discern the variations and identify the stable genotype among all methods.
29 January 2026 in Crop Breeding, Genetics and Genomics
The present study aimed to assess genetic variability among F4 progenies for pod yield and its components in groundnut. Conducted with 71 F4 progenies from three crosses—TMV-2 × ICGV-91114, TMV-2 × TG-69, and TMV-2 × ICGV-00350—alongside five check varieties, the investigation was carried out in an augmented design during Kharif 2019. The key objective includes evaluating genetic variability for pod yield and its components. Analysis of variance revealed significant genetic variability among the F4 progenies for all eight traits studied. The range of variability was highest for kernel yield plant-1, followed by pod yield plant-1 and pods plant-1, with minimal variation observed in days to 50 percent flowering. Genetic variability assessments showed high phenotypic and genotypic coefficients of variation for pods plant-1, pod yield plant-1, and kernel yield plant-1, while traits like days to 50 percent flowering and plant height exhibited lower variability. High heritability estimates, coupled with substantial genetic advances for pods plant-1, pod yield plant-1, and kernel yield plant-1, indicated potential for effective selection. Future work should focus on identifying the superior F4 progenies for selection for potential development of high-yielding groundnut varieties.