Intercellular flow of the phytohormone auxin underpins multiple developmental processes in plants. Plant-specific pin-formed (PIN) proteins and several phosphoglycoprotein (PGP) transporters are crucial factors in auxin transport–related development, yet the molecular function of PINs remains unknown. Here, we show that PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. Conditional gain-of-function alleles and quantitative measurements of auxin accumulation in Arabidopsis and tobacco cultured cells revealed that the action of PINs in auxin efflux is distinct from PGP, rate-limiting, specific to auxins, and sensitive to auxin transport inhibitors. This suggests a direct involvement of PINs in catalyzing cellular auxin efflux.

DNA repair associated with DNA replication is important for the conservation of genomic sequence information, whereas reconstitution of chromatin after replication sustains epigenetic information. We have isolated and characterized mutations in the BRU1 gene of Arabidopsis that suggest a novel link between these underlying maintenance mechanisms. Bru1 plants are highly sensitive to genotoxic stress and show stochastic release of transcriptional gene silencing. They also show increased intrachromosomal homologous recombination and constitutively activated expression of poly (ADP-ribose) polymerase-2 (AtPARP-2), the induction of which is associated with elevated DNA damage. Bru1 mutations affect the stability of heterochromatin organization but do not interfere with genome-wide DNA methylation. BRU1 encodes a novel nuclear protein with two predicted protein–protein interaction domains. The developmental abnormalities characteristic of bru1 mutant plants resemble those triggered by mutations in genes encoding subunits of chromatin assembly factor (CAF-1), the condensin complex, or MRE11. Comparison of bru1 with these mutants indicates cooperative roles in the replication and stabilization of chromatin structure, providing a novel link between chromatin replication, epigenetic inheritance, S-phase DNA damage checkpoints, and the regulation of meristem development.

Tef (Eragrostis tef), an indigenous cereal critical to food security in the Horn of Africa, is rich in minerals and protein, resistant to many biotic and abiotic stresses and safe for diabetics as well as sufferers of immune reactions to wheat gluten. We present the genome of tef, the first species in the grass subfamily Chloridoideae and the first allotetraploid assembled de novo. We sequenced the tef genome for marker-assisted breeding, to shed light on the molecular mechanisms conferring tef’s desirable nutritional and agronomic properties, and to make its genome publicly available as a community resource. The draft genome contains 672 Mbp representing 87% of the genome size estimated from flow cytometry. We also sequenced two transcriptomes, one from a normalized RNA library and another from unnormalized RNASeq data. The normalized RNA library revealed around 38000 transcripts that were then annotated by the SwissProt group. The CoGe comparative genomics platform was used to compare the tef genome to other genomes, notably sorghum. Scaffolds comprising approximately half of the genome size were ordered by syntenic alignment to sorghum producing tef pseudo-chromosomes, which were sorted into A and B genomes as well as compared to the genetic map of tef. The draft genome was used to identify novel SSR markers, investigate target genes for abiotic stress resistance studies, and understand the evolution of the prolamin family of proteins that are responsible for the immune response to gluten. It is highly plausible that breeding targets previously identified in other cereal crops will also be valuable breeding targets in tef. The draft genome and transcriptome will be of great use for identifying these targets for genetic improvement of this orphan crop that is vital for feeding 50 million people in the Horn of Africa.

The population of Africa will double in the next 33 years to reach 2.5 billion by 2050. Although roughly 60% of the continent’s population is engaged in agriculture, the produce from this sector cannot feed its citizens. Hence, in 2013 alone, Africa imported 56.5 million tons of wheat, maize, and soybean at the cost of 18.8 billion USD. Although crops cultivated in Africa play a vital role in their contribution to Food Security, they produce inferior yields compared to those in other parts of the world. For instance, the average cereal yield in Africa is only 1.6 t·ha⁻¹ compared to the global 3.9 t·ha⁻¹. Low productivity in Africa is also related to poor soil fertility and scarce moisture, as well as a variety of insect pests, diseases, and weeds. While moisture scarcity is responsible for up to 60% of yield losses in some African staple cereals, insect pests inflict annually substantial crop losses. In order to devise a strategy towards boosting crop productivity on the continent where food insecurity is most prevalent, these production constraints should be investigated and properly addressed. This review focuses on conventional (also known as genetic) intensification in which crop productivity is raised through breeding for cultivars with high yield-potential and those that thrive well under diverse and extreme environmental conditions. Improved crop varieties alone do not boost crop productivity unless supplemented with optimum soil, water, and plant management practices as well as the promotion of policies pertaining to inputs, credit, extension, and marketing. Studies in Kenya and Uganda have shown that the yield of cassava can be increased by 140% in farmers’ fields using improved varieties and management practices. In addition to traditional organic and inorganic fertilizers, biochar and African Dark Earths have been found to improve soil properties and to enhance productivity, although their availability and affordability to African farmers remains to be explored. The concept of Integrated Soil Fertility Management (ISFM) has been successfully implemented in some African countries in the Great Lake Region. Other innovative technologies favorably accepted by farmers are the “Push-pull System” (an elegant method of controlling a devastating insect pest and a parasitic weed) and NERICA (New Rice for Africa, in which rice varieties with desirable nutritional and agronomic properties were developed by crossing Asian and African rice). This review calls for African governments and institutions not only to provide conducive environments but also to abide by the Maputo 2003 Declaration where they agreed to invest 10% of their national budget to agricultural research and development as the outcome has a positive impact on productivity and ultimately improves the livelihood of farmers.

Tef [Eragrostis tef (Zucc.) Trotter] is a cereal crop resilient to adverse climatic and soil conditions, and possessing desirable storage properties. Although tef provides high quality food and grows under marginal conditions unsuitable for other cereals, it is considered to be an orphan crop because it has benefited little from genetic improvement. Hence, unlike other cereals such as maize and wheat, the productivity of tef is extremely low. In spite of the low productivity, tef is widely cultivated by over six million small-scale farmers in Ethiopia where it is annually grown on more than three million hectares of land, accounting for over 30% of the total cereal acreage. Tef, a tetraploid with 40 chromosomes (2n=4x=40), belongs to the Family Poaceae and, together with finger millet (Eleusine coracana Gaertn), to the Subfamily Chloridoideae. It was believed to have originated in Ethiopia. There are about 350 Eragrostis species of which E. tef is the only species cultivated for human consumption. At the present time, the gene bank in Ethiopia holds over five thousand tef accessions collected from geographical regions diverse in terms of climate and elevation. These germplasm accessions appear to have huge variability with regard to key agronomic and nutritional traits. In order to properly utilize the variability in developing new tef cultivars, various techniques have been implemented to catalog the extent and unravel the patterns of genetic diversity. In this review, we show some recent initiatives investigating the diversity of tef using genomics, transcriptomics and proteomics and discuss the prospect of these efforts in providing molecular resources that can aid modern tef breeding.