The Andean walnut (Juglans neotropica Diels, Juglandaceae) is an endangered, culturally keystone, and ecologically vital native tree inhabiting tropical montane cloud forests across the northern Andes. Despite intense anthropogenic fragmentation and escalating climate change risks, empirical nationwide baselines evaluating its multi-variable niche breadth and edaphic requirements across complex Andean topography remain absent. In this study, we compiled an empirical geodatabase of N = 250 verified field presence points across 11 provinces, subjected to a 100 m Euclidean spatial thinning protocol that yielded N = 154 spatially independent presence records (base NOGAL_EC_V06). We coupled these locations with high-resolution digital elevation models (Copernicus DEM GLO-30, 30 m), macroclimatic and solar radiation layers (WorldClim v2.1 and CHELSA, ~1 km), and standardized pedological profiles (SoilGrids 2.0, 5–15 cm depth) across five morpho-topographic analysis units: Western Slope, Inter-Andean Valleys (< 2,000 m a.s.l.), Inter-Andean Slopes (2,000–2,800 m a.s.l.), High Andean Sectors (> 2,800 m a.s.l.), and Eastern Slope. Our findings demonstrate an expansive, continuous elevational gradient spanning 2,168 vertical meters (904.7 to 3,073.2 m a.s.l. DEM / 3,091 m a.s.l. in situ GPS), disproving conventional dogmas that confine the species to a narrow belt between 2,000 and 2,600 m a.s.l. The demographic core is concentrated on the Inter-Andean Slopes (46.75% of thinned records; mean elevation: 2,420.6 ± 212.9 m a.s.l.; precipitation: 756.06 ± 106.72 mm/yr), while extensive populations occur along the hyper-humid Amazonian Eastern Slope (29.22%; 1,239.66 ± 339.55 mm/yr) and Pacific Western Slope (16.23%; 1,248.15 ± 467.30 mm/yr). Peripheral populations persist in arid valley bottoms (3.90%; 1,636.5 ± 159.3 m a.s.l.; BIO01: 18.80 ± 1.36 °C) and high-altitude sectors (3.90%; 2,928.7 ± 88.3 m a.s.l.; coldest month mean temperature BIO06: 5.70 ± 0.32 °C). Edaphic profiles indicate dominant loam to sandy-loam textures (mean sand: 397.27 ± 34.22 g/kg), with circumneutral pH in inter-Andean basins (6.35–6.43) shifting to acidic, organic carbon-rich substrates in highland and outer-flank environments (pH: 5.67–5.79; SOC: 61.15–67.02 g/kg; CEC: 28.35–32.20 cmol(+)/kg), alongside moderate coarse fragment tolerance (CFVO: 9.74–14.22%). Crucially, over 70% of surviving trees persist within traditional agroforestry systems, field boundaries, and homegardens rather than continuous mature forest reserves. These findings provide an objective foundation for germplasm transfer zoning, in situ and ex situ genetic conservation, and native agroforestry landscape restoration across the equatorial Andes.