Issam El Naqa

Prof. Issam El Naqa

Machine Learning, Moffitt Cancer Center, Tampa, Florida, USA
orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2020 in Radiology
Verified
Journal Article
Closed access
AZAlex Zwanenburg
Alex Zwanenburg
MVMartin Vallières
Martin Vallières
MAMahmoud A. Abdalah
Mahmoud A. Abdalah
HAHugo J. W. L. Aerts
Hugo J. W. L. Aerts
VAVincent Andrearczyk
Vincent Andrearczyk
SLSteffen Löck
Steffen Löck
The Image Biomarker Standardization Initiative validated consensus-based reference values for 169 radiomics features, thus enabling calibration and verification of radiomics software. Background Radiomic features may quantify characteristics present in medical imaging. However, the lack of standardized definitions and validated reference values have hampered clinical use. Purpos...

4 January 2021 in Nature Medicine
Verified
Journal Article
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JYJiali Yu
Jiali Yu
MGMichael Green
Michael Green
SLShasha Li
Shasha Li
YSYilun Sun
Yilun Sun
SJSara N. Journey
Sara N. Journey
WZWeiping Zou
Weiping Zou

1 March 2010 in International Journal of Radiation Oncology, Biology, Physics
Verified
Journal Article
Closed access
LMLawrence Marks
Lawrence Marks
SBSoren Bentzen
Soren Bentzen
JDJoseph O. Deasy
Joseph O. Deasy
FKFeng-Ming Kong
Feng-Ming Kong
JBJeffrey D. Bradley
Jeffrey D. Bradley
AJAndrew Jackson
Andrew Jackson

29 June 2015 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
MVM Vallières
M Vallières
CFC R Freeman
C R Freeman
SSS R Skamene
S R Skamene
Issam El NaqaIssam El Naqa
Issam El Naqa
This study aims at developing a joint FDG-PET and MRI texture-based model for the early evaluation of lung metastasis risk in soft-tissue sarcomas (STSs). We investigate if the creation of new composite textures from the combination of FDG-PET and MR imaging information could better identify aggressive tumours. Towards this goal, a cohort of 51 patients with histologically proven STSs of the extremities was retrospectively evaluated. All patients had pre-treatment FDG-PET and MRI scans comprised of T1-weighted and T2-weighted fat-suppression sequences (T2FS). Nine non-texture features (SUV metrics and shape features) and forty-one texture features were extracted from the tumour region of separate (FDG-PET, T1 and T2FS) and fused (FDG-PET/T1 and FDG-PET/T2FS) scans. Volume fusion of the FDG-PET and MRI scans was implemented using the wavelet transform. The influence of six different extraction parameters on the predictive value of textures was investigated. The incorporation of features into multivariable models was performed using logistic regression. The multivariable modeling strategy involved imbalance-adjusted bootstrap resampling in the following four steps leading to final prediction model construction: (1) feature set reduction; (2) feature selection; (3) prediction performance estimation; and (4) computation of model coefficients. Univariate analysis showed that the isotropic voxel size at which texture features were extracted had the most impact on predictive value. In multivariable analysis, texture features extracted from fused scans significantly outperformed those from separate scans in terms of lung metastases prediction estimates. The best performance was obtained using a combination of four texture features extracted from FDG-PET/T1 and FDG-PET/T2FS scans. This model reached an area under the receiver-operating characteristic curve of 0.984 ± 0.002, a sensitivity of 0.955 ± 0.006, and a specificity of 0.926 ± 0.004 in bootstrapping evaluations. Ultimately, lung metastasis risk assessment at diagnosis of STSs could improve patient outcomes by allowing better treatment adaptation.

1 March 2010 in International Journal of Radiation Oncology, Biology, Physics
Verified
Journal Article
Closed access
YLYaacov Richard Lawrence
Yaacov Richard Lawrence
XLX. Allen Li
X. Allen Li
Issam El NaqaIssam El Naqa
Issam El Naqa
CHCarol A. Hahn
Carol A. Hahn
LMLawrence B. Marks
Lawrence B. Marks
ADAdam Paul Dicker
Adam Paul Dicker

1 January 2015
Verified
Book Chapter
Closed access
PDF file
Issam El NaqaIssam El Naqa
Issam El Naqa
MMMartin J. Murphy
Martin J. Murphy