James McCarthy

Dr. James McCarthy

Manaaki Whenua – Landcare Research
orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 December 2019 in Global Change Biology
Verified
Journal Article
Open access
JKJens Kattge
Jens Kattge
GBGerhard Bönisch
Gerhard Bönisch
SDSandra Díaz
Sandra Díaz
SLSandra Lavorel
Sandra Lavorel
IPIain Colin Prentice
Iain Colin Prentice
CWChristian Wirth
Christian Wirth
Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.

23 August 2021 in Nature Ecology & Evolution
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Journal Article
Closed access
PDF file
MJMartin Jung
Martin Jung
AAAndy Arnell
Andy Arnell
XLXavier de Lamo
Xavier de Lamo
SGShaenandhoa García-Rangel
Shaenandhoa García-Rangel
MLMatthew Lewis
Matthew Lewis
PVPiero Visconti
Piero Visconti

30 September 2021 in Scientific Data
Verified
Journal Article
Open access
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DFDaniel Falster
Daniel Falster
RGRachael Gallagher
Rachael Gallagher
EWElizabeth H. Wenk
Elizabeth H. Wenk
IWIan J. Wright
Ian J. Wright
DIDony Indiarto
Dony Indiarto
KZKasia Ziemińska
Kasia Ziemińska
We introduce the AusTraits database - a compilation of values of plant traits for taxa in the Australian flora (hereafter AusTraits). AusTraits synthesises data on 448 traits across 28,640 taxa from field campaigns, published literature, taxonomic monographs, and individual taxon descriptions. Traits vary in scope from physiological measures of performance (e.g. photosynthetic gas exchange, water-use efficiency) to morphological attributes (e.g. leaf area, seed mass, plant height) which link to aspects of ecological variation. AusTraits contains curated and harmonised individual- and species-level measurements coupled to, where available, contextual information on site properties and experimental conditions. This article provides information on version 3.0.2 of AusTraits which contains data for 997,808 trait-by-taxon combinations. We envision AusTraits as an ongoing collaborative initiative for easily archiving and sharing trait data, which also provides a template for other national or regional initiatives globally to fill persistent gaps in trait knowledge.

1 October 2003 in Journal of Mechanical Design
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Journal Article
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AGAlba Perez Gracia
Alba Perez Gracia
JMJ. M. McCarthy
J. M. McCarthy
This paper presents a dual quaternion methodology for the kinematic synthesis of constrained robotic systems. These systems are constructed from one or more serial chains such that each chain imposes at least one constraint on the movement of the workpiece. Serial chains that have constrained workspaces can be synthesized by evaluating the kinematics equations of the chain on a finite set of task positions. In this case, the end-effector positions are known and the Denavit-Hartenberg parameters become design variables. Here we reformulate the kinematics equations in terms of successive screw displacements so the design variables are the coordinates defining the joint axes of the chain in a reference position. Then, dual quaternions defining these transformations are introduced to simplify the structure of the design equations. The result is a synthesis formulation that can be applied to a broad range of constrained serial chains, which can in turn be assembled into constrained parallel robots. We demonstrate the formulation and solution of the dual quaternion design equations for the spatial RPRP chain.

15 October 2024 in Nature Ecology & Evolution
Verified
Journal Article
Open access
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LMLidong Mo
Lidong Mo
TCThomas W. Crowther
Thomas W. Crowther
DMDaniel S. Maynard
Daniel S. Maynard
JHJohan van Den Hoogen
Johan van Den Hoogen
HMHaozhi Ma
Haozhi Ma
CZConstantin M. Zohner
Constantin M. Zohner
The density of wood is a key indicator of the carbon investment strategies of trees, impacting productivity and carbon storage. Despite its importance, the global variation in wood density and its environmental controls remain poorly understood, preventing accurate predictions of global forest carbon stocks. Here we analyse information from 1.1 million forest inventory plots alongside wood density data from 10,703 tree species to create a spatially explicit understanding of the global wood density distribution and its drivers. Our findings reveal a pronounced latitudinal gradient, with wood in tropical forests being up to 30% denser than that in boreal forests. In both angiosperms and gymnosperms, hydrothermal conditions represented by annual mean temperature and soil moisture emerged as the primary factors influencing the variation in wood density globally. This indicates similar environmental filters and evolutionary adaptations among distinct plant groups, underscoring the essential role of abiotic factors in determining wood density in forest ecosystems. Additionally, our study highlights the prominent role of disturbance, such as human modification and fire risk, in influencing wood density at more local scales. Factoring in the spatial variation of wood density notably changes the estimates of forest carbon stocks, leading to differences of up to 21% within biomes. Therefore, our research contributes to a deeper understanding of terrestrial biomass distribution and how environmental changes and disturbances impact forest ecosystems.

1 February 2008 in Mechanism and Machine Theory
Verified
Journal Article
Closed access
GSGim Song Soh
Gim Song Soh
JMJ. Michael McCarthy
J. Michael McCarthy