José Ferraz-Caetano

Dr. José Ferraz-Caetano

Department of Complex Systems Science - Graduate School of Informatics, Nagoya University, Nagoya, Aichi, Japan
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Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 August 2023 in Journal of Chemical Information and Modeling
Verified
Journal Article
Open access
José Ferraz-CaetanoJosé Ferraz-Caetano
José Ferraz-Caetano
FTFilipe Teixeira
Filipe Teixeira
Maria Natalia Dias Soeiro CordeiroMaria Natalia Dias Soeiro Cordeiro
Maria Natalia Dias Soeiro Cordeiro
Many challenges persist in developing accurate computational models for predicting solvation free energy (ΔGsol). Despite recent developments in Machine Learning (ML) methodologies that outperformed traditional quantum mechanical models, several issues remain concerning explanatory insights for broad chemical predictions with an acceptable speed-accuracy trade-off. To overcome this, we present a novel supervised ML model to predict the ΔGsol for an array of solvent-solute pairs. Using two different ensemble regressor algorithms, we made fast and accurate property predictions using open-source chemical features, encoding complex electronic, structural, and surface area descriptors for every solvent and solute. By integrating molecular properties and chemical interaction features, we have analyzed individual descriptor importance and optimized our model though explanatory information form feature groups. On aqueous and organic solvent databases, ML models revealed the predictive relevance of solutes with increasing polar surface area and decreasing polarizability, yielding better results than state-of-the-art benchmark Neural Network methods (without complex quantum mechanical or molecular dynamic simulations). Both algorithms successfully outperformed previous ΔGsol predictions methods, with a maximum absolute error of 0.22 ± 0.02 kcal mol-1, further validated in an external benchmark database and with solvent hold-out tests. With these explanatory and statistical insights, they allow a thoughtful application of this method for predicting other thermodynamic properties, stressing the relevance of ML modeling for further complex computational chemistry problems.

Verified
Journal Article
Open access
PDF file
José Ferraz-CaetanoJosé Ferraz-Caetano
José Ferraz-Caetano
FTFilipe Teixeira
Filipe Teixeira
Maria Natalia Dias Soeiro CordeiroMaria Natalia Dias Soeiro Cordeiro
Maria Natalia Dias Soeiro Cordeiro
The catalytic epoxidation of small alkenes and allylic alcohols includes a wide range of valuable chemical applications, with many works describing vanadium complexes as suitable catalysts towards sustainable process chemistry. But, given the complexity of these mechanisms, it is not always easy to sort out efficient examples for streamlining sustainable processes and tuning product optimization. In this review, we provide an update on major works of tunable vanadium-catalyzed epoxidations, with a focus on sustainable optimization routes. After presenting the current mechanistic view on vanadium catalysts for small alkenes and allylic alcohols’ epoxidation, we argue the key challenges in green process development by highlighting the value of updated kinetic and mechanistic studies, along with essential computational studies.

6 May 2024 in Chemosphere
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Journal Article
Open access
José Ferraz-CaetanoJosé Ferraz-Caetano
José Ferraz-Caetano
FTFilipe Teixeira
Filipe Teixeira
Maria Natalia Dias Soeiro CordeiroMaria Natalia Dias Soeiro Cordeiro
Maria Natalia Dias Soeiro Cordeiro
The accurate prediction of standard vaporization enthalpy (ΔvapHm°) for volatile organic compounds (VOCs) is of paramount importance in environmental chemistry, industrial applications and regulatory compliance. To overcome traditional experimental methods for predicting ΔvapHm° of VOCs, machine learning (ML) models enable a high-throughput, cost-effective property estimation. But despite a rising momentum, existing ML algorithms still present limitations in prediction accuracy and broad chemical applications. In this work, we present a data driven, explainable supervised ML model to predict ΔvapHm° of VOCs. The model was built on an established experimental database of 2410 unique molecules and 223 VOCs categorized by chemical groups. Using supervised ML regression algorithms, the Random Forest successfully predicted VOCs' ΔvapHm° with a mean absolute error of 3.02 kJ mol-1 and a 94% test score. The model was successfully validated through the prediction of ΔvapHm° for a known database of VOCs and through molecular group hold-out tests. Through chemical feature importance analysis, this explainable model revealed that VOC polarizability, connectivity indexes and electrotopological state are key for the model's prediction accuracy. We thus present a replicable and explainable model, which can be further expanded towards the prediction of other thermodynamic properties of VOCs.


26 February 2024 in New Journal of Chemistry
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Journal Article
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José Ferraz-CaetanoJosé Ferraz-Caetano
José Ferraz-Caetano
FTFilipe Teixeira
Filipe Teixeira
Maria Natalia Dias Soeiro CordeiroMaria Natalia Dias Soeiro Cordeiro
Maria Natalia Dias Soeiro Cordeiro
This communication presents a novel approach to set up a machine learning-ready database for epoxidation reactions, focusing on vanadium catalysts.

23 February 2023 in Philosophies
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José Ferraz-CaetanoJosé Ferraz-Caetano
José Ferraz-Caetano
Explanation is a foundational goal in the exact sciences. Besides the contemporary considerations on ‘description’, ‘classification’, and ‘prediction’, we often see these terms in thriving applications of artificial intelligence (AI) in chemistry hypothesis generation. Going beyond describing ‘things in the world’, these applications can make accurate numerical property calculations from theoretical or topological descriptors. This association makes an interesting case for a logic of discovery in chemistry: are these induction-led ventures showing a shift in how chemists can problematize research questions? In this article, I present a fresh perspective on the current context of discovery in chemistry. I argue how data-driven statistical predictions in chemistry can be explained as a quasi-logical process for generating chemical theories, beyond the classic examples of organic and theoretical chemistry. Through my position on formal models of scientific explanation, I demonstrate how the dawn of AI can provide novel insights into the explanatory power of scientific endeavors.