Jonas Van Der Donckt

Mr. Jonas Van Der Donckt

Ghent University
orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 December 2022 in Biomedical Signal Processing and Control
Verified
Journal Article
Closed access
JDJonas Van Der Donckt
Jonas Van Der Donckt
EDEmiel Deprost
Emiel Deprost
NVNicolas Vandenbussche
Nicolas Vandenbussche
MRMichael Rademaker
Michael Rademaker
Gilles VandewieleGilles Vandewiele
Gilles Vandewiele
Sofie Van HoeckeSofie Van Hoecke
Sofie Van Hoecke

20 December 2022 in Scientific Reports
Verified
Journal Article
Open access
PDF file
MKMitchel Kappen
Mitchel Kappen
JDJonas Van Der Donckt
Jonas Van Der Donckt
GVGert Vanhollebeke
Gert Vanhollebeke
JAJens Allaert
Jens Allaert
VDVic Degraeve
Vic Degraeve
MVMarie-Anne Vanderhasselt
Marie-Anne Vanderhasselt
The use of speech as a digital biomarker to detect stress levels is increasingly gaining attention. Yet, heterogeneous effects of stress on specific acoustic speech features have been observed, possibly due to previous studies’ use of different stress labels/categories and the lack of solid stress induction paradigms or validation of experienced stress. Here, we deployed a controlled, within-subject psychosocial stress induction experiment in which participants received both neutral (control condition) and negative (negative condition) comparative feedback after solving a challenging cognitive task. This study is the first to use a (non-actor) within-participant design that verifies a successful stress induction using both self-report (i.e., decreased reported valence) and physiological measures (i.e., increased heart rate acceleration using event-related cardiac responses during feedback exposure). Analyses of acoustic speech features showed a significant increase in Fundamental Frequency (F0) and Harmonics-to-Noise Ratio (HNR), and a significant decrease in shimmer during the negative feedback condition. Our results using read-out-loud speech comply with earlier research, yet we are the first to validate these results in a well-controlled but ecologically-valid setting to guarantee the generalization of our findings to real-life settings. Further research should aim to replicate these results in a free speech setting to test the robustness of our findings for real-world settings and should include semantics to also take into account what you say and not only how you say it.

30 July 2024 in Scientific Reports
Verified
Journal Article
Open access
PDF file
JDJonas Van Der Donckt
Jonas Van Der Donckt
NVNicolas Vandenbussche
Nicolas Vandenbussche
JDJeroen Van Der Donckt
Jeroen Van Der Donckt
SCStephanie Chen
Stephanie Chen
MSMarija Stojchevska
Marija Stojchevska
SHSofie Van Hoecke
Sofie Van Hoecke
Chronic disease management and follow-up are vital for realizing sustained patient well-being and optimal health outcomes. Recent advancements in wearable technologies, particularly wrist-worn devices, offer promising solutions for longitudinal patient monitoring, replacing subjective, intermittent self-reporting with objective, continuous monitoring. However, collecting and analyzing data from wearables presents several challenges, such as data entry errors, non-wear periods, missing data, and wearable artifacts. In this work, we explore these data analysis challenges using two real-world datasets (mBrain21 and ETRI lifelog2020). We introduce practical countermeasures, including participant compliance visualizations, interaction-triggered questionnaires to assess personal bias, and an optimized pipeline for detecting non-wear periods. Additionally, we propose a visualization-oriented approach to validate processing pipelines using scalable tools such as tsflex and Plotly-Resampler. Lastly, we present a bootstrapping methodology to evaluate the variability of wearable-derived features in the presence of partially missing data segments. Prioritizing transparency and reproducibility, we provide open access to our detailed code examples, facilitating adaptation in future wearable research. In conclusion, our contributions provide actionable approaches for improving wearable data collection and analysis.

17 March 2023
Verified
Book Chapter
Open access
PDF file
JVJarne Verhaeghe
Jarne Verhaeghe
JDJonas Van Der Donckt
Jonas Van Der Donckt
Femke OngenaeFemke Ongenae
Femke Ongenae
Sofie Van HoeckeSofie Van Hoecke
Sofie Van Hoecke
Feature selection is a crucial step in developing robust and powerful machine learning models. Feature selection techniques can be divided into two categories: filter and wrapper methods. While wrapper methods commonly result in strong predictive performances, they suffer from a large computational complexity and therefore take a significant amount of time to complete, especially when dealing with high-dimensional feature sets. Alternatively, filter methods are considerably faster, but suffer from several other disadvantages, such as (i) requiring a threshold value, (ii) many filter methods not taking into account intercorrelation between features, and (iii) ignoring feature interactions with the model. To this end, we present powershap, a novel wrapper feature selection method, which leverages statistical hypothesis testing and power calculations in combination with Shapley values for quick and intuitive feature selection. Powershap is built on the core assumption that an informative feature will have a larger impact on the prediction compared to a known random feature. Benchmarks and simulations show that powershap outperforms other filter methods with predictive performances on par with wrapper methods while being significantly faster, often even reaching half or a third of the execution time. As such, powershap provides a competitive and quick algorithm that can be used by various models in different domains. Furthermore, powershap is implemented as a plug-and-play and open-source sklearn component, enabling easy integration in conventional data science pipelines. User experience is even further enhanced by also providing an automatic mode that automatically tunes the hyper-parameters of the powershap algorithm, allowing to use the algorithm without any configuration needed.

9 February 2022 in SoftwareX
Verified
Journal Article
Open access
JDJonas Van Der Donckt
Jonas Van Der Donckt
JDJonas Van Der Donckt
Jonas Van Der Donckt
EDEmiel Deprost
Emiel Deprost
SHSofie Van Hoecke
Sofie Van Hoecke

5 July 2021 in Sensors
Verified
Journal Article
Open access
PDF file
OPOlivier Pieters
Olivier Pieters
EDEmiel Deprost
Emiel Deprost
JDJonas Van Der Donckt
Jonas Van Der Donckt
LBLore Brosens
Lore Brosens
PSPieter Sanczuk
Pieter Sanczuk
FWFrancis Wyffels
Francis Wyffels
Monitoring climate change, and its impacts on ecological, agricultural, and other societal systems, is often based on temperature data derived from official weather stations. Yet, these data do not capture most microclimates, influenced by soil, vegetation and topography, operating at spatial scales relevant to the majority of organisms on Earth. Detecting and attributing climate change impacts with confidence and certainty will only be possible by a better quantification of temperature changes in forests, croplands, mountains, shrublands, and other remote habitats. There is an urgent need for a novel, miniature and simple device filling the gap between low-cost devices with manual data download (no instantaneous data) and high-end, expensive weather stations with real-time data access. Here, we develop an integrative real-time monitoring system for microclimate measurements: MIRRA (Microclimate Instrument for Real-time Remote Applications) to tackle this problem. The goal of this platform is the design of a miniature and simple instrument for near instantaneous, long-term and remote measurements of microclimates. To that end, we optimised power consumption and transfer data using a cellular uplink. MIRRA is modular, enabling the use of different sensors (e.g., air and soil temperature, soil moisture and radiation) depending upon the application, and uses an innovative node system highly suitable for remote locations. Data from separate sensor modules are wirelessly sent to a gateway, thus avoiding the drawbacks of cables. With this sensor technology for the long-term, low-cost, real-time and remote sensing of microclimates, we lay the foundation and open a wide range of possibilities to map microclimates in different ecosystems, feeding a next generation of models. MIRRA is, however, not limited to microclimate monitoring thanks to its modular and wireless design. Within limits, it is suitable or any application requiring real-time data logging of power-efficient sensors over long periods of time. We compare the performance of this system to a reference system in real-world conditions in the field, indicating excellent correlation with data collected by established data loggers. This proof-of-concept forms an important foundation to creating the next version of MIRRA, fit for large scale deployment and possible commercialisation. In conclusion, we developed a novel wireless cost-effective sensor system for microclimates.