Jyoti Kumar

Dr. Jyoti Kumar

Stanford University

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 October 2020 in International Journal of Laboratory Hematology
Verified
Journal Article
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KSKunwar Singh
Kunwar Singh
SMSasha Mittal
Sasha Mittal
SGSumanth Gollapudi
Sumanth Gollapudi
ABAlexandra Butzmann
Alexandra Butzmann
JKJyoti Kumar
Jyoti Kumar
RORobert Ohgami
Robert Ohgami

24 March 2021 in Biology
Verified
Journal Article
Open access
PDF file
ABAlexandra Butzmann
Alexandra Butzmann
JKJyoti Kumar
Jyoti Kumar
KSKaushik Sridhar
Kaushik Sridhar
SGSumanth Gollapudi
Sumanth Gollapudi
RORobert Ohgami
Robert Ohgami
Castleman disease (CD) is a rare lymphoproliferative disorder known to represent at least four distinct clinicopathologic subtypes. Large advancements in our clinical and histopathologic description of these diverse diseases have been made, resulting in subtyping based on number of enlarged lymph nodes (unicentric versus multicentric), according to viral infection by human herpes virus 8 (HHV-8) and human immunodeficiency virus (HIV), and with relation to clonal plasma cells (POEMS). In recent years, significant molecular and genetic abnormalities associated with CD have been described. However, we continue to lack a foundational understanding of the biological mechanisms driving this disease process. Here, we review all cases of CD with molecular abnormalities described in the literature to date, and correlate cytogenetic, molecular, and genetic abnormalities with disease subtypes and phenotypes. Our review notes complex karyotypes in subsets of cases, specific mutations in PDGFRB N666S in 10% of unicentric CD (UCD) and NCOA4 L261F in 23% of idiopathic multicentric CD (iMCD) cases. Genes affecting chromatin organization and abnormalities in methylation are seen more commonly in iMCD while abnormalities within the mitogen-activated protein kinase (MAPK) and interleukin signaling pathways are more frequent in UCD. Interestingly, there is a paucity of genetic studies evaluating HHV-8 positive multicentric CD (HHV-8+ MCD) and POEMS-associated CD. Our comprehensive review of genetic and molecular abnormalities in CD identifies subtype-specific and novel pathways which may allow for more targeted treatment options and unique biologic therapies.

5 May 2020 in American Journal of Clinical Pathology
Verified
Journal Article
Closed access
GSGregory D Scott
Gregory D Scott
JKJyoti Kumar
Jyoti Kumar
JOJean S Oak
Jean S Oak
SBScott D Boyd
Scott D Boyd
PRPhilipp W Raess
Philipp W Raess
DGDita A Gratzinger
Dita A Gratzinger
Objectives: Kikuchi-Fujimoto disease (KFD) and systemic lupus erythematosus (SLE) are benign entities with histologic features that raise concern about malignancy and infection. We searched for a histology-independent KFD/SLE signature relying on only immunophenotype and basic clinical characteristics.Methods: A histology-independent KFD/SLE signature was generated using 975 excised lymph nodes with flow immunophenotyping, including 16 cases of KFD/SLE. This signature was then evaluated in 1,198 fine-needle aspiration (FNA) specimens.Results: The top flow cytometry discriminant for KFD/SLE was uniform CD38+ expression on CD19+ events. Immunohistochemistry demonstrated nodules of IgD+, IgM− B cells surrounding necrotizing and activated T-cell areas. A signature combining 6 flow cytometry criteria with age and sample site had a positive predictive value of 88% for KFD/SLE, which had a prevalence of 1.6%. All 4 signature-positive FNA cases with follow-up excision were KFD/SLE. At a second institution, 4 of 5 KFD/SLE cases passed the top discriminant.Conclusions: A flow cytometry signature combined with age and biopsy site identifies KFD/SLE independent of histology, suggesting a shared immune composition and independently confirming that KFD/SLE represents a distinct entity. Unexpectedly, an IgD+CD38+ small B-cell population is a distinctive feature of KFD/SLE, suggesting a possible pathologic role for anergic/autoreactive B cells.

11 June 2020 in Histopathology
Verified
Journal Article
Closed access
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NBNivaz Brar
Nivaz Brar
ABAlexandra Butzmann
Alexandra Butzmann
JKJyoti Kumar
Jyoti Kumar
RPRaheem Peerani
Raheem Peerani
EMElizabeth A Morgan
Elizabeth A Morgan
RORobert Ohgami
Robert Ohgami

27 March 2021 in Diagnostics
Verified
Journal Article
Open access
PDF file
KSKunwar Singh
Kunwar Singh
SGSumanth Gollapudi
Sumanth Gollapudi
SMSasha Mittal
Sasha Mittal
CSCorinn Small
Corinn Small
JKJyoti Kumar
Jyoti Kumar
RORobert Ohgami
Robert Ohgami
B-cell and T-cell lymphomas and leukemias often have distinct genetic mutations that are diagnostically defining or prognostically significant. A subset of these mutations consists of specific point mutations, which can be evaluated using genetic sequencing approaches or point mutation specific antibodies. Here, we describe genes harboring point mutations relevant to B-cell and T-cell malignancies and discuss the current availability of these targeted point mutation specific antibodies. We also evaluate the possibility of generating novel antibodies against known point mutations by computationally assessing for chemical and structural features as well as epitope antigenicity of these targets. Our results not only summarize several genetic mutations and identify existing point mutation specific antibodies relevant to hematologic malignancies, but also reveal potential underdeveloped targets which merit further study.

28 July 2020 in International Journal of Molecular Medicine
Verified
Journal Article
Open access
PDF file
ABAlexandra Butzmann
Alexandra Butzmann
KSKaushik Sridhar
Kaushik Sridhar
DJDiwash Jangam
Diwash Jangam
JKJyoti Kumar
Jyoti Kumar
MSMalaya Kumar Sahoo
Malaya Kumar Sahoo
RORobert Ohgami
Robert Ohgami
Angioimmunoblastic T‑cell lymphoma (AITL) is a uniquely aggressive mature T‑cell neoplasm. In recent years, recurrent genetic mutations in ras homolog family member A (RHOA), tet methylcytosine dioxygenase 2 (TET2), DNA methyltransferase 3 alpha (DNMT3A) and isocitrate dehydrogenase [NADP(+)] 2 (IDH2) have been identified as associated with AITL. However, a deep molecular study assessing both DNA mutations and RNA expression profile combined with digital image analysis is lacking. The present study aimed to evaluate the significance of molecular and morphologic features by high resolution digital image analysis in several cases of AITL. To do so, a total of 18 separate tissues from 10 patients with AITL were collected and analyzed. The results identified recurrent mutations in RHOA, TET2, DNMT3A, and IDH2, and demonstrated increased DNA mutations in coding, promoter and CCCTC binding factor (CTCF) binding sites in RHOA mutated AITLs vs. RHOA non‑mutated cases, as well as increased overall survival in RHOA mutated patients. In addition, single cell computational digital image analysis morphologically characterized RHOA mutated AITL cells as distinct from cells from RHOA mutation negative patients. Computational analysis of single cell morphological parameters revealed that RHOA mutated cells have decreased eccentricity (more circular) compared with RHOA non‑mutated AITL cells. In conclusion, the results from the present study expand our understanding of AITL and demonstrate that there are specific cell biological and morphological manifestations of RHOA mutations in cases of AITL.