Kim Ferguson

Ms. Kim Ferguson

Wageningen University & Research, Droevendaalsesteeg 1, 6708PB, Wageningen, Netherlands
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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 August 2020 in Biological Reviews
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Journal Article
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KLKelley Leung
Kelley Leung
ERErica Ras
Erica Ras
KFKim Ferguson
Kim Ferguson
SASimone Ariëns
Simone Ariëns
DBDirk Babendreier
Dirk Babendreier
Bart PannebakkerBart Pannebakker
Bart Pannebakker
Biological control is widely successful at controlling pests, but effective biocontrol agents are now more difficult to import from countries of origin due to more restrictive international trade laws (the Nagoya Protocol). Coupled with increasing demand, the efficacy of existing and new biocontrol agents needs to be improved with genetic and genomic approaches. Although they have been underutilised in the past, application of genetic and genomic techniques is becoming more feasible from both technological and economic perspectives. We review current methods and provide a framework for using them. First, it is necessary to identify which biocontrol trait to select and in what direction. Next, the genes or markers linked to these traits need be determined, including how to implement this information into a selective breeding program. Choosing a trait can be assisted by modelling to account for the proper agro‐ecological context, and by knowing which traits have sufficiently high heritability values. We provide guidelines for designing genomic strategies in biocontrol programs, which depend on the organism, budget, and desired objective. Genomic approaches start with genome sequencing and assembly. We provide a guide for deciding the most successful sequencing strategy for biocontrol agents. Gene discovery involves quantitative trait loci analyses, transcriptomic and proteomic studies, and gene editing. Improving biocontrol practices includes marker‐assisted selection, genomic selection and microbiome manipulation of biocontrol agents, and monitoring for genetic variation during rearing and post‐release. We conclude by identifying the most promising applications of genetic and genomic methods to improve biological control efficacy.

31 May 2017 in Proceedings Of The Royal Society B-Biological Sciences
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KSKamiel Spoelstra
Kamiel Spoelstra
RGRoy H. A. van Grunsven
Roy H. A. van Grunsven
JRJip J. C. Ramakers
Jip J. C. Ramakers
KFKim Ferguson
Kim Ferguson
TRThomas Raap
Thomas Raap
MVMarcel E. Visser
Marcel E. Visser
Artificial light at night has shown a remarkable increase over the past decades. Effects are reported for many species groups, and include changes in presence, behaviour, physiology and life-history traits. Among these, bats are strongly affected, and how bat species react to light is likely to vary with light colour. Different spectra may therefore be applied to reduce negative impacts. We used a unique set-up of eight field sites to study the response of bats to three different experimental light spectra in an otherwise dark and undisturbed natural habitat. We measured activity of three bat species groups around transects with light posts emitting white, green and red light with an intensity commonly used to illuminate countryside roads. The results reveal a strong and spectrum-dependent response for the slow-flyingMyotisandPlecotusand more agilePipistrellusspecies, but not forNyctalusandEptesicusspecies.PlecotusandMyotisspecies avoided white and green light, but were equally abundant in red light and darkness. The agile, opportunistically feedingPipistrellusspecies were significantly more abundant around white and green light, most likely because of accumulation of insects, but equally abundant in red illuminated transects compared to dark control. Forest-dwellingMyotisandPlecotusspecies and more synanthropicPipistrellusspecies are thus least disturbed by red light. Hence, in order to limit the negative impact of light at night on bats, white and green light should be avoided in or close to natural habitat, but red lights may be used if illumination is needed.

17 July 2019 in Entomologia Experimentalis et Applicata
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APAngeliki Paspati
Angeliki Paspati
KFKim Ferguson
Kim Ferguson
Eveline VerhulstEveline Verhulst
Eveline Verhulst
Alberto UrbanejaAlberto Urbaneja
Alberto Urbaneja
JGJoel González-Cabrera
Joel González-Cabrera
Bart PannebakkerBart Pannebakker
Bart Pannebakker
Amblyseius swirskii Athias‐Henriot (Acari: Phytoseiidae) is a predatory mite used to control whiteflies and thrips in protected crops. This biocontrol agent, originating from the Eastern Mediterranean region, has been mass‐reared for commercial use since 2005 and is widely used in augmentative biocontrol programs. As a polyphagous predator, it has to cope with different biotic and abiotic factors. However, possible adaptation to mass rearing for production might be hindering its resilience and capacity for optimum performance in the field. In this study, we investigated the effect of long‐term mass rearing on the genetic diversity of A. swirskii. We identified six microsatellite loci from whole‐genome nanopore sequencing of A. swirskii and used these in a comparative analysis of the genetic diversity and differentiation in eight wild populations collected from Israel in 2017 and a commercially available population. Our results indicate that the commercial population is 2.5× less heterozygous than the wild A. swirskii. Furthermore, the commercial population has the highest genetic differentiation from all the natural populations, as indicated by higher pairwise Fst values. Overall, we show that commercially reared A. swirskii have reduced genetic variation compared to their wild counterparts, which may reduce their performance when released to control pests in an integrated pest management (IPM) context.

11 December 2020 in Insect Molecular Biology
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KFKim Ferguson
Kim Ferguson
SVS. Visser
S. Visser
MDMartina Dalikova
Martina Dalikova
IPI. Provazníková
I. Provazníková
Alberto UrbanejaAlberto Urbaneja
Alberto Urbaneja
Eveline VerhulstEveline Verhulst
Eveline Verhulst
Nesidiocoris tenuis (Reuter) is an efficient predatory biological control agent used throughout the Mediterranean Basin in tomato crops but regarded as a pest in northern European countries. From the family Miridae, it is an economically important insect yet very little is known in terms of genetic information and no genomic or transcriptomic studies have been published. Here, we use a linked‐read sequencing strategy on a single female N. tenuis. From this, we assembled the 355 Mbp genome and delivered an ab initio, homology‐based and evidence‐based annotation. Along the way, the bacterial “contamination” was removed from the assembly. In addition, bacterial lateral gene transfer (LGT) candidates were detected in the N. tenuis genome. The complete gene set is composed of 24 688 genes; the associated proteins were compared to other hemipterans (Cimex lectularis, Halyomorpha halys and Acyrthosiphon pisum). We visualized the genome using various cytogenetic techniques, such as karyotyping, CGH and GISH, indicating a karyotype of 2n = 32. Additional analyses include the localization of 18S rDNA and unique satellite probes as well as pooled sequencing to assess nucleotide diversity and neutrality of the commercial population. This is one of the first mirid genomes to be released and the first of a mirid biological control agent.

1 October 2020 in G3: Genes, Genomes, Genetics
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KFKim Ferguson
Kim Ferguson
TKTore Kursch-Metz
Tore Kursch-Metz
Eveline VerhulstEveline Verhulst
Eveline Verhulst
Bart PannebakkerBart Pannebakker
Bart Pannebakker
Trichogramma brassicae (Bezdenko) are egg parasitoids that are used throughout the world as biological control agents and in laboratories as model species. Despite this ubiquity, few genetic resources exist beyond COI, ITS2, and RAPD markers. Aided by a Wolbachia infection, a wild-caught strain from Germany was reared for low heterozygosity and sequenced in a hybrid de novo strategy, after which several assembling strategies were evaluated. The best assembly, derived from a DBG2OLC-based pipeline, yielded a genome of 235 Mbp made up of 1,572 contigs with an N50 of 556,663 bp. Following a rigorous ab initio-, homology-, and evidence-based annotation, 16,905 genes were annotated and functionally described. As an example of the utility of the genome, a simple ortholog cluster analysis was performed with sister species T. pretiosum, revealing over 6000 shared clusters and under 400 clusters unique to each species. The genome and transcriptome presented here provides an essential resource for comparative genomics of the commercially relevant genus Trichogramma, but also for research into molecular evolution, ecology, and breeding of T. brassicae.

24 November 2020 in Genes
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KFKim Ferguson
Kim Ferguson
Bart PannebakkerBart Pannebakker
Bart Pannebakker
ACAlejandra Centurión
Alejandra Centurión
JHJoost van Den Heuvel
Joost van Den Heuvel
RNRonald Nieuwenhuis
Ronald Nieuwenhuis
Eveline VerhulstEveline Verhulst
Eveline Verhulst
Bracon brevicornis is an ectoparasitoid of a wide range of larval-stage Lepidopterans, including several pests of important crops, such as the corn borer, Ostrinia nubilalis. It is also one of the earliest documented cases of complementary sex determination in Hymenoptera. Here, we present the linked-read-based genome of B. brevicornis, complete with an ab initio-derived annotation and protein comparisons with fellow braconids, Fopius arisanus and Diachasma alloeum. We demonstrate the potential of linked-read assemblies in exploring regions of heterozygosity and search for structural and homology-derived evidence of the complementary sex determiner gene (csd).