Rubén Gerardo León-Chan

Dr. Rubén Gerardo León-Chan

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 October 2024 in Viruses
Verified
Journal Article
Open access
PDF file
Luis AmarillasLuis Amarillas
Luis Amarillas
FPFedra Padilla-Lafarga
Fedra Padilla-Lafarga
Rubén Gerardo León-ChanRubén Gerardo León-Chan
Rubén Gerardo León-Chan
JPJorge Padilla
Jorge Padilla
YLYadira Lugo
Yadira Lugo
MEMitzi Estrada-Acosta
Mitzi Estrada-Acosta
Background: Antimicrobial-resistant bacteria represent a serious threat to public health. Among these bacteria, Salmonella is of high priority because of its morbidity levels and its ability to induce different types of cancer. Aim: This study aimed to identify Salmonella strains encoding genes linked to the promotion of precancerous lesions and to isolate a bacteriophage to evaluate its preclinical potential against these bacteria. Methodology: An epidemiological approach based on wastewater analysis was employed to isolate Salmonella strains and detect genes associated with the induction of precancerous lesions. Antimicrobial susceptibility was assessed by the disk diffusion method. A bacteriophage was isolated via the double agar technique, and its morphological characteristics, stability, host range, replication dynamics, and ability to control Salmonella under different conditions were evaluated. The bacteriophage genome was sequenced and analyzed using bioinformatics tools. Results: Thirty-seven Salmonella strains were isolated, seventeen of which contained the five genes associated with precancerous lesions’ induction. These strains exhibited resistance to multiple antimicrobials, including fluoroquinolones. A bacteriophage from the Autographiviridae family with lytic activity against 21 bacterial strains was isolated. This phage exhibited a 20 min replication cycle, releasing 52 ± 3 virions per infected cell. It demonstrated stability and efficacy in reducing the Salmonella concentration in simulated gastrointestinal conditions, and its genome lacked genes that represent a biosafety risk. Conclusion: This bacteriophage shows promising preclinical potential as a biotherapeutic agent against Salmonella.

14 June 2023 in Horticulturae
Verified
Journal Article
Open access
PDF file
Brandon Estefano Morales-MeridaBrandon Estefano Morales-Merida
Brandon Estefano Morales-Merida
JGJesús Christian Grimaldi-Olivas
Jesús Christian Grimaldi-Olivas
ACAbraham Cruz-Mendívil
Abraham Cruz-Mendívil
CVClaudia Villicaña
Claudia Villicaña
JVJosé B. Valdez-Torres
José B. Valdez-Torres
Josefina León FélixJosefina León Félix
Josefina León Félix
Ultraviolet-B radiation (UV-B) and cold limit the growth and development of plants, which generates changes in gene expression. This allows plants to respond to stress through regulatory proteins, such as transcription factors, that activate or repress the expression of stress-response genes. RNA-Seq data and WGCNA analyses were utilized to identify the hub genes. Our study found a total of 25, 24, and 29 transcription factors at different time points T1, T2, and T3, respectively, under combined stress (ultraviolet-B radiation and cold). RVE1 (MYB-related), COL2 (CO-like), and DBB1b (DBB) were identified as candidate hub genes. Moreover, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment showed that RVE1, DBB1b, and COL2 were mostly involved in energy production, the antioxidant system (enzymatic and non-enzymatic), signaling through abscisic acid and CA2+, response to light stimulus, and cellular homeostasis. These findings provide the basis for further investigation related to UV-B radiation and cold stress response mechanisms in plants.

5 July 2024 in Plants
Verified
Journal Article
Open access
PDF file
Brandon Estefano Morales-MeridaBrandon Estefano Morales-Merida
Brandon Estefano Morales-Merida
JGJesús Christian Grimaldi-Olivas
Jesús Christian Grimaldi-Olivas
ACAbraham Cruz-Mendívil
Abraham Cruz-Mendívil
CVClaudia Villicaña
Claudia Villicaña
JVJosé B. Valdez-Torres
José B. Valdez-Torres
Josefina León FélixJosefina León Félix
Josefina León Félix
Bell pepper plants are sensitive to environmental changes and are significantly affected by abiotic factors such as UV-B radiation and cold, which reduce their yield and production. Various approaches, including omics data integration, have been employed to understand the mechanisms by which this crop copes with abiotic stress. This study aimed to find metabolic changes in bell pepper stems caused by UV-B radiation and cold by integrating omic data. Proteome and metabolome profiles were generated using liquid chromatography coupled with mass spectrometry, and data integration was performed in the plant metabolic pathway database. The combined stress of UV-B and cold induced the accumulation of proteins related to photosynthesis, mitochondrial electron transport, and a response to a stimulus. Further, the production of flavonoids and their glycosides, as well as affecting carbon metabolism, tetrapyrrole, and scopolamine pathways, were identified. We have made the first metabolic regulatory network map showing how bell pepper stems respond to cold and UV-B stress. We did this by looking at changes in proteins and metabolites that help with respiration, photosynthesis, and the buildup of photoprotective and antioxidant compounds.

1 October 2020 in Phytopathology®
Verified
Journal Article
Closed access
Luis AmarillasLuis Amarillas
Luis Amarillas
MEMitzi Estrada-Acosta
Mitzi Estrada-Acosta
Rubén Gerardo León-ChanRubén Gerardo León-Chan
Rubén Gerardo León-Chan
Carlos Alfonso López OronaCarlos Alfonso López Orona
Carlos Alfonso López Orona
LLLuis Alberto Lightbourn
Luis Alberto Lightbourn
Black Sigatoka disease, caused by the fungus Pseudocercospora fijiensis, is one of the most devastating diseases of banana around the world. Fungicide applications are the primary tool used to manage black Sigatoka, but fungicide resistance in P. fijiensis, as in other fungal pathogens, is one of the major limitations in the efficient management and prevention of this disease. In the current study, we present the draft genome of P. fijiensis strain IIL-20, the first genomic sequence published from a strain of this fungus isolated in North America. Bioinformatic analysis showed putative genes involved in fungus virulence and fungicide resistance. These findings may lead us to a better understanding of the molecular pathogenesis of this fungal pathogen and also to the discovery of the mechanisms conferring fungicide resistance.

31 May 2025 in Agriculture
Verified
Journal Article
Open access
PDF file
Rubén Gerardo León-ChanRubén Gerardo León-Chan
Rubén Gerardo León-Chan
Brandon Estefano Morales-MeridaBrandon Estefano Morales-Merida
Brandon Estefano Morales-Merida
Luis AmarillasLuis Amarillas
Luis Amarillas
NVNancy Varela-Bojórquez
Nancy Varela-Bojórquez
LLLuis Alberto Lightbourn
Luis Alberto Lightbourn
Background: Soil degradation and nutrient depletion critically impact pecan (Carya illinoinensis) production, reducing yield and soil fertility. Colloidal nutrition, a novel approach involving nano-scale nutrient formulations, could offer potential for soil restoration. Aim: This study aimed to assess the impact of colloidal nutrition on key physical, chemical, and biological soil health parameters in pecan tree cultivation. Methods: Soil from two orchards with 30-year-old pecan trees was used where different nutrition treatments were applied: conventional and colloidal. The variables considered included physical, chemical, and biological properties for the assessment of soil health indicators. Results: The colloidal treatment showed low salinity (2020: 2.04; 2021: 0.88 dS/m) and higher levels of humic acids (1.52 g C/100 g soil), available water depth (2020: 305.11, 2021: 350.00 m3/ha), and soil organic matter (2020: 2.10%; 2021: 2.11%). Furthermore, 6 of the 17 phytopathogens that were examined were not detected in the colloidal treatment. Conclusions: This study enhanced our understanding of the improvements that colloidal treatment could potentially provide to the physical, chemical, and biological aspects of soil health in pecan orchards.

19 September 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
Luis AmarillasLuis Amarillas
Luis Amarillas
FPFedra Padilla
Fedra Padilla
Rubén Gerardo León-ChanRubén Gerardo León-Chan
Rubén Gerardo León-Chan
JPJorge Padilla
Jorge Padilla
YLYadira Lugo
Yadira Lugo
MEMitzi Estrada-Acosta
Mitzi Estrada-Acosta
Antimicrobial-resistant bacteria represent a serious threat to public health. Among these bacteria, Salmonella is of high priority because of its morbidity levels and its ability to induce different types of cancer. Aim: This study aimed to identify Salmonella strains encoding genes linked to the promotion of precancerous lesions and to isolate a bacteriophage to evaluating its preclinical potential against these bacteria. Methodology: An epidemiological approach based on wastewater analysis was employed to isolate Salmonella strains and detect genes associated with the induction of precancerous lesions. Antimicrobial susceptibility was assessed by disk diffusion method. A bacteriophage was isolated via the double agar technique, and its morphological characteristics, stability, host range, replication dynamics and ability to control Salmonella under different conditions were evaluated. The bacteriophage genome was sequenced and analyzed using bioinformatics tools. Results: Thirty-seven Salmonella strains were isolated, 17 of which contained the five genes associated with precancerous lesions induction. These strains exhibited resistance to multiple antimicrobials, including fluoroquinolones. A bacteriophage from the Au-tographiviridae family with lytic activity against 21 bacterial strains was isolated. This phage ex-hibited a 20 min replication cycle, releasing 52 ± 3 virions per infected cell. It demonstrated sta-bility and efficacy in reducing Salmonella concentration in simulated gastrointestinal conditions, and its genome lacked genes that represent a biosafety risk. Conclusion: This bacteriophage shows promising preclinical potential as a biotherapeutic agent against Salmonella.