Hydrogen technologies have the potential to reduce aviation’s CO₂ emissions but come with many challenges. This paper introduces a scalable hydrogen fuel cell model tailored for system integration analysis in early aircraft design phases. The model focuses on Proton Exchange Membrane Fuel Cells (PEMFCs) and is based on thermodynamic equations and empirical data to simulate performance under different ambient and operating conditions; it also includes a simplified model of the Balance of Plant (BOP) systems and is implemented in OpenModelica. The model performance is validated through a comparison of the simulated polarization curves with real datasheet data. A case study highlights the peculiarities of this model by studying the sizing of the fuel cell stacks for a modified ATR 72 aircraft. The developed model effectively supports the early design exploration of the aircraft with a greater level of detail for system integration studies, essential to better explore the potential of aircraft featuring hydrogen-based power systems.