Yi LIN

Dr. Yi LIN

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
24 March 2024 in Proceedings of the AAAI Conference on Artificial Intelligence
Verified
Journal Article
Open access
PDF file
HJHaibo Jin
Haibo Jin
HCHaoxuan Che
Haoxuan Che
YLYi LIN
Yi LIN
HCHao Chen
Hao Chen
Automatic medical report generation (MRG) is of great research value as it has the potential to relieve radiologists from the heavy burden of report writing. Despite recent advancements, accurate MRG remains challenging due to the need for precise clinical understanding and disease identification. Moreover, the imbalanced distribution of diseases makes the challenge even more pronounced, as rare diseases are underrepresented in training data, making their diagnosis unreliable. To address these challenges, we propose diagnosis-driven prompts for medical report generation (PromptMRG), a novel framework that aims to improve the diagnostic accuracy of MRG with the guidance of diagnosis-aware prompts. Specifically, PromptMRG is based on encoder-decoder architecture with an extra disease classification branch. When generating reports, the diagnostic results from the classification branch are converted into token prompts to explicitly guide the generation process. To further improve the diagnostic accuracy, we design cross-modal feature enhancement, which retrieves similar reports from the database to assist the diagnosis of a query image by leveraging the knowledge from a pre-trained CLIP. Moreover, the disease imbalanced issue is addressed by applying an adaptive logit-adjusted loss to the classification branch based on the individual learning status of each disease, which overcomes the barrier of text decoder's inability to manipulate disease distributions. Experiments on two MRG benchmarks show the effectiveness of the proposed method, where it obtains state-of-the-art clinical efficacy performance on both datasets.

24 January 2024 in IEEE Reviews in Biomedical Engineering
Verified
Journal Article
Closed access
LLLuyang Luo
Luyang Luo
XWXi Wang
Xi Wang
YLYi LIN
Yi LIN
XMXiaoqi Ma
Xiaoqi Ma
ATAndong Tan
Andong Tan
HCHao Chen
Hao Chen
Breast cancer has reached the highest incidence rate worldwide among all malignancies since 2020. Breast imaging plays a significant role in early diagnosis and intervention to improve the outcome of breast cancer patients. In the past decade, deep learning has shown remarkable progress in breast cancer imaging analysis, holding great promise in interpreting the rich information and complex context of breast imaging modalities. Considering the rapid improvement in deep learning technology and the increasing severity of breast cancer, it is critical to summarize past progress and identify future challenges to be addressed. This paper provides an extensive review of deep learning-based breast cancer imaging research, covering studies on mammograms, ultrasound, magnetic resonance imaging, and digital pathology images over the past decade. The major deep learning methods and applications on imaging-based screening, diagnosis, treatment response prediction, and prognosis are elaborated and discussed. Drawn from the findings of this survey, we present a comprehensive discussion of the challenges and potential avenues for future research in deep learning-based breast cancer imaging.

14 June 2019 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
XYXin Yang
Xin Yang
YLYi LIN
Yi LIN
ZWZhiwei Wang
Zhiwei Wang
XLXin Li
Xin Li
KCKwang-Ting Cheng
Kwang-Ting Cheng
In this paper, we propose a bi-modality medical image synthesis approach based on sequential generative adversarial network (GAN) and semi-supervised learning. Our approach consists of two generative modules that synthesize images of the two modalities in a sequential order. A method for measuring the synthesis complexity is proposed to automatically determine the synthesis order in our sequential GAN. Images of the modality with a lower complexity are synthesized first, and the counterparts with a higher complexity are generated later. Our sequential GAN is trained end-to-end in a semi-supervised manner. In supervised training, the joint distribution of bi-modality images are learned from real paired images of the two modalities by explicitly minimizing the reconstruction losses between the real and synthetic images. To avoid overfitting limited training images, in unsupervised training the marginal distribution of each modality is learned based on unpaired images by minimizing the Wasserstein distance between the distributions of real and fake images. We comprehensively evaluate the proposed model using two synthesis tasks based on three types of evaluate metrics and user studies. Visual and quantitative results demonstrate the superiority of our method to the state-of-the-art methods, and reasonable visual quality and clinical significance. Code is made publicly available at https://github.com/hustlinyi/Multimodal-Medical-Image-Synthesis.

3 January 2025 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
YZYun Zhu
Yun Zhu
DZDong Zhang
Dong Zhang
YLYi LIN
Yi LIN
YFYifei Feng
Yifei Feng
JTJinhui Tang
Jinhui Tang
Medical image segmentation demands the aggregation of global and local feature representations, posing a challenge for current methodologies in handling both long-range and short-range feature interactions. Recently, vision mamba (ViM) models have emerged as promising solutions for addressing model complexities by excelling in long-range feature iterations with linear complexity. However, existing ViM approaches overlook the importance of preserving short-range local dependencies by directly flattening spatial tokens and are constrained by fixed scanning patterns that limit the capture of dynamic spatial context information. To address these challenges, we introduce a simple yet effective method named context clustering ViM (CCViM), which incorporates a context clustering module within the existing ViM models to segment image tokens into distinct windows for adaptable local clustering. Our method effectively combines long-range and short-range feature interactions, thereby enhancing spatial contextual representations for medical image segmentation tasks. Extensive experimental evaluations on diverse public datasets, i.e ., Kumar, CPM17, ISIC17, ISIC18, and Synapse, demonstrate the superior performance of our method compared to current state-of-the-art methods. Our code can be found at https://github.com/zymissy/CCViM.

14 August 2023 in Medical Image Analysis
Verified
Journal Article
Closed access
YLYi LIN
Yi LIN
ZQZhiyong Qu
Zhiyong Qu
HCHao Chen
Hao Chen
ZGZhongke Gao
Zhongke Gao
YLYuexiang Li
Yuexiang Li
KCKwang-Ting Cheng
Kwang-Ting Cheng

2 September 2025 in Nature Biomedical Engineering
Verified
Journal Article
Closed access
PDF file
JMJiabo Ma
Jiabo Ma
ZGZhengrui Guo
Zhengrui Guo
FZFengtao Zhou
Fengtao Zhou
YWYihui Wang
Yihui Wang
YXYingxue Xu
Yingxue Xu
HCHao Chen
Hao Chen