Submarine groundwater discharge (SGD) is a significant source of biogenic elements in estuaries, and relevant studies in karstic estuaries are scarce. Krka River Estuary (KRE), located on the eastern Adriatic Sea (Croatia), is a typical oligotrophic stratified karstic estuary. In this study, based on ²²⁶Ra and ²²⁸Ra, the total SGD flux into the KRE surface layer was estimated to be (12.8–16.2) × 10⁵ m³/day. A conservative estimation of the fresh groundwater flux was (5.0–8.3) × 10⁵ m³/day, which accounts for 10–17% of the Krka River discharge into the estuary. By establishing water and nutrient budgets in the KRE surface layer, we found that SGD dominated the nutrient sources, although it accounted for a small portion of the total inflow water. Specifically, net SGD‐derived dissolved inorganic nitrogen (DIN) and silicates contributed 58–90% and 24–64%, respectively, to the total input fluxes. These results indicate that SGD was a major external nutrient source, in which net SGD‐derived high DIN flux and high DIN to dissolved inorganic phosphorus ratio may affect productivity in the KRE ecosystem and nearby Adriatic Sea. Additionally, net SGD‐derived dissolved inorganic carbon (DIC) flux in the KRE (1.53 mol · m² · day) was much higher than those in most estuaries worldwide, suggesting that the DIC‐enriched karst aquifers are important sources for global carbon cycle. Therefore, the impact of net SGD‐derived DIC from karst aquifers on coastal seas will likely become more evident and substantial with further development of global climate change, such as sea level rise.

Submarine groundwater (SGD) is one of the most significant pathways for the exchange of groundwater and/or source of nutrients, metals and carbon to the ocean, subsequently cause deleterious impacts on the coastal ecosystems. Microorganisms have been recognized as the important participators in the biogeochemical processes in the SGD. In this study, by utilizing 16S rRNA-based Illumina Miseq sequencing technology, we investigated bacterial diversity and distribution in both fresh well water and brackish recirculated porewater along the coasts in the Yellow Sea. The results showed that Actinobacteria and Betaproteobacteria, especially Comamonas spp. and Limnohabitans spp. were dominated in fresh well samples. Distinct patterns of bacterial communities were found among the porewater samples due to different locations, for examples, Cyanbacteria was the most abundant in the porewater samples far from the algal bloomed areas. The analysis of correlation between representative bacterial taxonomic groups and the contexture environmental parameters showed that fresh well water and brackish porewater might provide different nutrients to the coastal waters. Potential key bacterial groups such as Comamonas spp. may be excellent candidates for the bioremediation of the natural pollutants in the SGD. Our comprehensive understanding of bacterial diversity in the SGD along the coasts of the Yellow Sea will create a basis for designing the effective clean-up approach in-situ, and provide valuable information for the coastal management.