Sidharth Mahapatra

Prof. Sidharth Mahapatra

Univeristy of Nebraska Medical Center
orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2019 in The Lancet Respiratory Medicine
Verified
Journal Article
Closed access
RKRobinder G Khemani
Robinder G Khemani
LSLincoln Smith
Lincoln Smith
YLYolanda M Lopez-Fernandez
Yolanda M Lopez-Fernandez
JKJeni Kwok
Jeni Kwok
RMRica Morzov
Rica Morzov
JZJiri Zurek
Jiri Zurek

1 November 2018 in Gastroenterology
Verified
Journal Article
Closed access
PDF file
SCSeema Chugh
Seema Chugh
SBSrikanth Barkeer
Srikanth Barkeer
SRSatyanarayana Rachagani
Satyanarayana Rachagani
RNRama Krishna Nimmakayala
Rama Krishna Nimmakayala
NPNaveenkumar Perumal
Naveenkumar Perumal
SBSurinder Kumar Batra
Surinder Kumar Batra

29 May 2017 in Expert Opinion on Therapeutic Targets
Verified
Journal Article
Closed access
SGShailendra K. Gautam
Shailendra K. Gautam
SKSushil Kumar
Sushil Kumar
ACAndrew Cannon
Andrew Cannon
BHBradley Hall
Bradley Hall
RBRakesh Bhatia
Rakesh Bhatia
MJManeesh Jain
Maneesh Jain
Introduction: Pancreatic cancer (PC) is characterized by mucin overexpression. MUC4 is the most differentially overexpressed membrane-bound mucin that plays a functional role in disease progression and therapy resistance. Area covered: We describe the clinicopathological significance of MUC4, summarize mechanisms contributing to its deregulated expression, review preclinical studies aimed at inhibiting MUC4, and discuss how MUC4 overexpression provides opportunities for developing targeted therapies. Finally, we discuss the challenges for developing MUC4-based therapeutics, and identify areas where efforts should be directed to effectively exploit MUC4 as a therapeutic target for PC. Expert opinion: Studies demonstrating that abrogation of MUC4 expression reduces proliferation and metastasis of PC cells and enhances sensitivity to therapeutic agents affirm its utility as a therapeutic target. Emerging evidence also supports the suitability of MUC4 as a potential immunotherapy target. However, these studies have been limited to in vitro, ex vivo or in vivo approaches using xenograft tumors in immunodeficient murine models. For translational relevance, MUC4-targeted therapies should be evaluated in murine models with intact immune system and accurate tumor microenvironment. Additionally, future studies evaluating MUC4 as a target for immunotherapy must entail characterization of immune response in PC patients and investigate its association with immunosuppression and survival.

15 February 2020 in Molecular Cancer
Verified
Journal Article
Open access
PDF file
RKRanjana K. Kanchan
Ranjana K. Kanchan
Jawed A SiddiquiJawed A Siddiqui
Jawed A Siddiqui
Sidharth MahapatraSidharth Mahapatra
Sidharth Mahapatra
SBSurinder K. Batra
Surinder K. Batra
Mohd NasserMohd Nasser
Mohd Nasser
Brain metastasis (BM) predominantly occurs in triple-negative (TN) and epidermal growth factor 2 (HER2)-positive breast cancer (BC) patients, and currently, there is an unmet need for the treatment of these patients. BM is a complex process that is regulated by the formation of a metastatic niche. A better understanding of the brain metastatic processes and the crosstalk between cancer cells and brain microenvironment is essential for designing a novel therapeutic approach. In this context, the aberrant expression of miRNA has been shown to be associated with BM. These non-coding RNAs/miRNAs regulate metastasis through modulating the formation of a metastatic niche and metabolic reprogramming via regulation of their target genes. However, the role of miRNA in breast cancer brain metastasis (BCBM) is poorly explored. Thus, identification and understanding of miRNAs in the pathobiology of BCBM may identify a novel candidate miRNA for the early diagnosis and prevention of this devastating process. In this review, we focus on understanding the role of candidate miRNAs in the regulation of BC brain metastatic processes as well as designing novel miRNA-based therapeutic strategies for BCBM.

7 March 2020 in Brain Pathology
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Journal Article
Open access
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RKRanjana K. Kanchan
Ranjana K. Kanchan
NPNaveenkumar Perumal
Naveenkumar Perumal
PAPranita Atri
Pranita Atri
RVRamakanth Chirravuri Venkata
Ramakanth Chirravuri Venkata
ITIshwor Thapa
Ishwor Thapa
Sidharth MahapatraSidharth Mahapatra
Sidharth Mahapatra
Of the four primary subgroups of medulloblastoma, the most frequent cytogenetic abnormality, i17q, distinguishes Groups 3 and 4 which carry the highest mortality; haploinsufficiency of 17p13.3 is a marker for particularly poor prognosis. At the terminal end of this locus lies miR‐1253, a brain‐enriched microRNA that regulates bone morphogenic proteins during cerebellar development. We hypothesized miR‐1253 confers novel tumor‐suppressive properties in medulloblastoma. Using two different cohorts of medulloblastoma samples, we first studied the expression and methylation profiles of miR‐1253. We then explored the anti‐tumorigenic properties of miR‐1253, in parallel with a biochemical analysis of apoptosis and proliferation, and isolated oncogenic targets using high‐throughput screening. Deregulation of miR‐1253 expression was noted, both in medulloblastoma clinical samples and cell lines, by epigenetic silencing via hypermethylation; specific de‐methylation of miR‐1253 not only resulted in rapid recovery of expression but also a sharp decline in tumor cell proliferation and target gene expression. Expression restoration also led to a reduction in tumor cell virulence, concomitant with activation of apoptotic pathways, cell cycle arrest and reduction of markers of proliferation. We identified two oncogenic targets of miR‐1253, CDK6 and CD276, whose silencing replicated the negative trophic effects of miR‐1253. These data reveal novel tumor‐suppressive properties for miR‐1253, i.e., (i) loss of expression via epigenetic silencing; (ii) negative trophic effects on tumor aggressiveness; and (iii) downregulation of oncogenic targets.

28 December 2021 in Diagnostics
Verified
Journal Article
Open access
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SRSutapa Ray
Sutapa Ray
NCNagendra Chaturvedi
Nagendra Chaturvedi
KBKishor Kumar Bhakat
Kishor Kumar Bhakat
Angie RizzinoAngie Rizzino
Angie Rizzino
Sidharth MahapatraSidharth Mahapatra
Sidharth Mahapatra
Medulloblastoma (MB) is the most common malignant central nervous system tumor in pediatric patients. Mainstay of therapy remains surgical resection followed by craniospinal radiation and chemotherapy, although limitations to this therapy are applied in the youngest patients. Clinically, tumors are divided into average and high-risk status on the basis of age, metastasis at diagnosis, and extent of surgical resection. However, technological advances in high-throughput screening have facilitated the analysis of large transcriptomic datasets that have been used to generate the current classification system, dividing patients into four primary subgroups, i.e., WNT (wingless), SHH (sonic hedgehog), and the non-SHH/WNT subgroups 3 and 4. Each subgroup can further be subdivided on the basis of a combination of cytogenetic and epigenetic events, some in distinct signaling pathways, that activate specific phenotypes impacting patient prognosis. Here, we delve deeper into the genetic basis for each subgroup by reviewing the extent of cytogenetic events in key genes that trigger neoplastic transformation or that exhibit oncogenic properties. Each of these discussions is further centered on how these genetic aberrations can be exploited to generate novel targeted therapeutics for each subgroup along with a discussion on challenges that are currently faced in generating said therapies. Our future hope is that through better understanding of subgroup-specific cytogenetic events, the field may improve diagnosis, prognosis, and treatment to improve overall quality of life for these patients.