This study tested whether machine learning (ML) methods can effectively separate individual plants from complex 3D canopy laser scans as a prerequisite to analyzing particular plant features. For this, we scanned mung bean and chickpea crops with PlantEye (R) laser scanners. Firstly, we segmented the crop canopies from the background in 3D space using the Region Growing Segmentation algorithm. Then, Convolutional Neural Network (CNN) based ML algorithms were fine-tuned for plant counting. Application of the CNN-based (Convolutional Neural Network) processing architecture was possible only after we reduced the dimensionality of the data to 2D. This allowed for the identification of individual plants and their counting with an accuracy of 93.18% and 92.87% for mung bean and chickpea plants, respectively. These steps were connected to the phenotyping pipeline, which can now replace manual counting operations that are inefficient, costly, and error-prone. The use of CNN in this study was innovatively solved with dimensionality reduction, addition of height information as color, and consequent application of a 2D CNN-based approach. We found there to be a wide gap in the use of ML on 3D information. This gap will have to be addressed, especially for more complex plant feature extractions, which we intend to implement through further research.

Modelling of hydrological extremes and drought modelling in particular has received much attention over recent decades. The main aim of this study is to apply a statistical model for drought estimation (in this case deficit volume) using extreme value theory and the index-flood method and to reduce the uncertainties in estimation of drought event return levels. Deficit volumes for 133 catchments in the Czech Republic (1901–2015) were simulated by hydrological model BILAN. The validation of severity, intensity and length of simulated drought events revealed good match with the available observed data. To estimate return levels of the deficit volumes, it is assumed (in accord with the index-flood method), that the deficit volumes within a homogeneous region are identically distributed after scaling with a site-specific factor. The parameters of the scaled regional distribution are estimated using L-moments. The goodness-of-fit of the statistical model is assessed by Anderson–Darling test. For the estimation of critical values, sampling methods allowing for handling of years without drought were used. It is shown, that the index-flood model with a Generalized Pareto distribution performs well and substantially reduces the uncertainty related to the estimation of the shape parameter and of the large deficit volume quantiles.

This data descriptor presents novel, annotated 3D point cloud plant scans generated by a high-throughput phenotyping platform (LeasyScan, ICRISAT, India). It focuses on broad-leaf legume species (mungbean, common bean, cowpea, and lima bean). The dataset, generated by PlantEye(R) F600 technology, captures multispectral 3D scans of plant canopies. It includes 223 scans, providing detailed organ-level segmentation annotations for embryonic leaves, leaves, petioles, stems, and whole plants. The dataset fills a critical gap in plant phenomics research by offering a base of annotated data to support AI model development efforts in 3D computer vision. Data preprocessing, annotation procedures, and potential applications in crop research disciplines are further discussed. The dataset, preprocessing code, annotations, and a MIAPPE-compliant data sheet are also presented via the GitHub repository for further updates and expansion.

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