Makoto Miyata

Dr. Makoto Miyata

Graduate School of Science, Osaka City University, Japan
orcid

Research Focus & Metrics

Academic Career Length

36Years (1991-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 September 2006 in Proceedings of the National Academy of Sciences
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Journal Article
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YHYuichi Hiratsuka
Yuichi Hiratsuka
Makoto MiyataMakoto Miyata
Makoto Miyata
TTTetsuya Tada
Tetsuya Tada
TUTaro Q. P. Uyeda
Taro Q. P. Uyeda
Biological molecular motors have a number of unique advantages over artificial motors, including efficient conversion of chemical energy into mechanical work and the potential for self-assembly into larger structures, as is seen in muscle sarcomeres and bacterial and eukaryotic flagella. The development of an appropriate interface between such biological materials and synthetic devices should enable us to realize useful hybrid micromachines. Here we describe a microrotary motor composed of a 20-μm-diameter silicon dioxide rotor driven on a silicon track by the gliding bacterium Mycoplasma mobile . This motor is fueled by glucose and inherits some of the properties normally attributed to living systems.

19 January 2020 in Genes to Cells
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Makoto MiyataMakoto Miyata
Makoto Miyata
RRRobert C. Robinson
Robert C. Robinson
TUTaro Uyeda
Taro Uyeda
YFYoshihiro Fukumori
Yoshihiro Fukumori
SFShun‐Ichi Fukushima
Shun‐Ichi Fukushima
KWKen‐Ichi Wakabayashi
Ken‐Ichi Wakabayashi
Motility often plays a decisive role in the survival of species. Five systems of motility have been studied in depth: those propelled by bacterial flagella, eukaryotic actin polymerization and the eukaryotic motor proteins myosin, kinesin and dynein. However, many organisms exhibit surprisingly diverse motilities, and advances in genomics, molecular biology and imaging have showed that those motilities have inherently independent mechanisms. This makes defining the breadth of motility nontrivial, because novel motilities may be driven by unknown mechanisms. Here, we classify the known motilities based on the unique classes of movement‐producing protein architectures. Based on this criterion, the current total of independent motility systems stands at 18 types. In this perspective, we discuss these modes of motility relative to the latest phylogenetic Tree of Life and propose a history of motility. During the ~4 billion years since the emergence of life, motility arose in Bacteria with flagella and pili, and in Archaea with archaella. Newer modes of motility became possible in Eukarya with changes to the cell envelope. Presence or absence of a peptidoglycan layer, the acquisition of robust membrane dynamics, the enlargement of cells and environmental opportunities likely provided the context for the (co)evolution of novel types of motility.

1 March 2001 in Journal of Bacteriology
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Journal Article
Closed access
SSShintaro Seto
Shintaro Seto
GLGerlinde Layh-Schmitt
Gerlinde Layh-Schmitt
TKTsuyoshi Kenri
Tsuyoshi Kenri
Makoto MiyataMakoto Miyata
Makoto Miyata
A method was developed for protein localization in Mycoplasma pneumoniae by immunofluorescence microscopy. The P1 adhesin protein was revealed to be located at least at one cell pole in all adhesive cells, as has been observed by immunoelectron microscopy. Cell images were classified according to P1 localization and assigned by DNA content. Cells with a single P1 focus at one cell pole had a lower DNA content than cells with two foci, at least one of which was positioned at a cell pole. Those with one focus at each cell pole had the highest DNA content, suggesting that the nascent attachment organelle is formed next to the old one and migrates to the opposite cell pole before cell division. Double staining revealed that the accessory proteins for cytadherence—HMW1, HMW3, P30, P90, P40, and P65—colocalized with the P1 adhesin in all cells. The localization of cytadherence proteins was also examined in cytadherence-deficient mutant cells with a branched morphology. In M5 mutant cells, which lack the P90 and P40 proteins, HMW1, HMW3, P1, and P30 were focused at the cell poles of short branches, and P65 showed no signal. In M7 mutant cells, which produce a truncated P30 protein, HMW1, HMW3, P1, P90, and P40 were focused, and P65 showed no signal. In M6 mutant cells, which express no HMW1 and a truncated P30 protein, the P1 adhesin was distributed throughout the entire cell body, and no signal was detected for the other proteins. These results suggest that the cytadherence proteins are sequentially assembled to the attachment organelle with HMW1 first, HMW3, P1, P30, P90, and P40 next, and P65 last.

8 March 2017 in Nature Communications
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MTMarie Trussart
Marie Trussart
EYEva Yus
Eva Yus
SMSira Martinez
Sira Martinez
DBDavide Baù
Davide Baù
YTYuhei O. Tahara
Yuhei O. Tahara
LSLuís Serrano
Luís Serrano
DNA-binding proteins are central regulators of chromosome organization; however, in genome-reduced bacteria their diversity is largely diminished. Whether the chromosomes of such bacteria adopt defined three-dimensional structures remains unexplored. Here we combine Hi-C and super-resolution microscopy to determine the structure of the Mycoplasma pneumoniae chromosome at a 10 kb resolution. We find a defined structure, with a global symmetry between two arms that connect opposite poles, one bearing the chromosomal Ori and the other the midpoint. Analysis of local structures at a 3 kb resolution indicates that the chromosome is organized into domains ranging from 15 to 33 kb. We provide evidence that genes within the same domain tend to be co-regulated, suggesting that chromosome organization influences transcriptional regulation, and that supercoiling regulates local organization. This study extends the current understanding of bacterial genome organization and demonstrates that a defined chromosomal structure is a universal feature of living systems.

13 October 2010 in Annual Review of Microbiology
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Journal Article
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Makoto MiyataMakoto Miyata
Makoto Miyata
Mycoplasma, a genus of pathogenic bacteria, forms a membrane protrusion at a cell pole. It binds to solid surfaces with this protrusion and then glides. The mechanism is not related to known bacterial motility systems, such as flagella or pili, or to conventional motor proteins, including myosin. We have studied the fastest species, Mycoplasma mobile, and have proposed a working model as follows. The gliding machinery is composed of four huge proteins at the base of the membrane protrusion and supported by a cytoskeletal architecture from the cell inside. Many flexible legs approximately 50 nm long are sticking out from the machinery. The movements generated by the ATP hydrolysis cell inside are transmitted to the “leg” protein through a “gear” protein, resulting in repeated binding, pull, and release of the sialylgalactose fixed on the surface by the legs. The gliding of Mycoplasma pneumoniae, a species distantly related to M. mobile, is also discussed.

1 March 2005 in Journal of Bacteriology
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SSShintaro Seto
Shintaro Seto
TKTsuyoshi Kenri
Tsuyoshi Kenri
TTTetsuo Tomiyama
Tetsuo Tomiyama
Makoto MiyataMakoto Miyata
Makoto Miyata
To examine the participation of P1 adhesin in gliding of Mycoplasma pneumoniae , we examined the effects of an anti-P1 monoclonal antibody on individual gliding mycoplasmas. The antibody reduced the gliding speed and removed the gliding cells from the glass over time in a concentration-dependent manner but had only a slight effect on nongliding cells, suggesting that the conformational changes of P1 adhesin and its displacement are involved in the gliding mechanism.