A deep understanding of the genetic control of drought tolerance and iron deficiency tolerance is essential to hasten the process of developing improved varieties with higher tolerance through genomics-assisted breeding. In this context, an improved genetic map with 1205 loci was developed spanning 2598.3 cM with an average 2.2 cM distance between loci in the recombinant inbred line (TAG 24 × ICGV 86031) population using high-density 58K single nucleotide polymorphism (SNP) “Axiom_Arachis” array. Quantitative trait locus (QTL) analysis was performed using extensive phenotyping data generated for 20 drought tolerance- and two iron deficiency tolerance-related traits from eight seasons (2004–2015) at two locations in India, one in Niger, and one in Senegal. The genome-wide QTL discovery analysis identified 19 major main-effect QTLs with 10.0–33.9% phenotypic variation explained (PVE) for drought tolerance- and iron deficiency tolerance- related traits. Major main-effect QTLs were detected for haulm weight (20.1% PVE), SCMR (soil plant analytical development (SPAD) chlorophyll meter reading, 22.4% PVE), and visual chlorosis rate (33.9% PVE). Several important candidate genes encoding glycosyl hydrolases; malate dehydrogenases; microtubule-associated proteins; and transcription factors such as MADS-box, basic helix-loop-helix (bHLH), NAM, ATAF, and CUC (NAC), and myeloblastosis (MYB) were identified underlying these QTL regions. The putative function of these genes indicated their possible involvement in plant growth, development of seed and pod, and photosynthesis under drought or iron deficiency conditions in groundnut. These genomic regions and candidate genes, after validation, may be useful to develop molecular markers for deploying genomics-assisted breeding for enhancing groundnut yield under drought stress and iron-deficient soil conditions.

Iron-deficiency chlorosis (IDC) is an important abiotic constraint affecting the growth and yield of groundnut in calcareous and alkaline soils worldwide. The present study investigated the inheritance of IDC resistance among four straight crosses of groundnut involving four IDC susceptible cultivars as females and a common IDC resistant male parent. The F1's of all the four crosses were resistant to IDC indicating the dominant nature of IDC resistance. The F2's of all the four crosses showed a good fit to the ratio of 15 (IDC resistant): 1 (IDC susceptible) and their behavior among the F3's was as per the expected ratio of 7:4:4:1. The IDC resistance in groundnut is under the control of duplicate dominant genes wherein, the presence of a dominant allele at either of the loci results in IDC resistance, while duplicate recessive results in IDC susceptibility. This information would facilitate development of IDC resistant cultivars of groundnut