Sohaib Khan

Dr. Sohaib Khan

International Centre for Cancer Vaccine Science, University of Gdańsk, Gdańsk, Pomorskie, Poland
orcid
Molecular microbiologist specializing in microbial genomics ...

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 June 2018 in Packaging Technology and Science
Verified
Journal Article
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IAIshfaq Ahmed
Ishfaq Ahmed
HLHong Lin
Hong Lin
LZLong Zou
Long Zou
ZLZhenxing Li
Zhenxing Li
ABAaron L. Brody
Aaron L. Brody
LSLirui Sun
Lirui Sun

1 July 2021 in Bioorganic Chemistry
Verified
Journal Article
Closed access
Mohamed SharafMohamed Sharaf
Mohamed Sharaf
MAMuhammad Arif
Muhammad Arif
Sohaib KhanSohaib Khan
Sohaib Khan
Mohnad AbdallaMohnad Abdalla
Mohnad Abdalla
SSSamah Shabana
Samah Shabana
CLChenguang Liu
Chenguang Liu

11 February 2021 in Journal of Biomaterials Science, Polymer Edition
Verified
Journal Article
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MAMuhammad Arif
Muhammad Arif
Mohamed SharafMohamed Sharaf
Mohamed Sharaf
SASamreen
Samreen
Sohaib KhanSohaib Khan
Sohaib Khan
ZCZhe Chi
Zhe Chi
CLChenguang Liu
Chenguang Liu
Driven by the need to find alternatives to control H. pylori infections, this work describes the development of chitosan-PMLA nanoparticulate systems as carriers for antimicrobial glycolipid. By using a simple ionic gelation method stable nanoparticle was obtained showing an encapsulation efficiency of 73.1 ± 1.3% and an average size of 217.0 ± 15.6 nm for rhamnolipids chitosan-PMLA nanoparticles (RL-CS-NPs). Glycolipid incorporation and particle size were correspondingly corroborated by FT-IR and TEM analysis. Rhamnolipids chitosan nanoparticles (RL-CS-NPs) presented the highest antimicrobial effect towards H. pylori (ATCC 26695) exhibiting a minimal inhibitory concentration of 132 µg/mL and a biofilm inhibition ability of 99%. Additionally, RL-CS-NPs did not interfere with human fibroblasts viability and proliferation under the tested conditions. The results revealed that the RL-CS-NPs were able to inhibit bacterial growth showing adequate cytocompatibility and might become, after additional studies, a valuable approach to fight H. pylori biofilm related-infections.

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LTLei Tang
Lei Tang
LQLiping Qiu
Liping Qiu
CLCong Liu
Cong Liu
GDGuoying Du
Guoying Du
ZMZhaolan Mo
Zhaolan Mo
YMYunxiang Mao
Yunxiang Mao
Pyropia yezoensis, one of the most economically important marine algae, suffers from the biotic stress of the oomycete necrotrophic pathogen Pythium porphyrae. However, little is known about the molecular defensive mechanisms employed by Pyr. yezoensis during the infection process. In the present study, we defined three stages of red rot disease based on histopathological features and photosynthetic physiology. Transcriptomic analysis was carried out at different stages of infection to identify the genes related to the innate immune system in Pyr. yezoensis. In total, 2139 up-regulated genes and 1672 down-regulated genes were identified from all the infected groups. Pathogen receptor genes, including three lectin genes (pattern recognition receptors (PRRs)) and five genes encoding typical plant R protein domains (leucine rich repeat (LRR), nucleotide binding site (NBS), or Toll/interleukin-1 receptor (TIR)), were found to be up-regulated after infection. Several defense mechanisms that were typically regarded as PAMP-triggered immunity (PTI) in plants were induced during the infection. These included defensive and protective enzymes, heat shock proteins, secondary metabolites, cellulase, and protease inhibitors. As a part of the effector-triggered immunity (ETI), the expression of genes related to the ubiquitin-proteasome system (UPS) and hypersensitive cell death response (HR) increased significantly during the infection. The current study suggests that, similar to plants, Pyr. yezoensis possesses a conserved innate immune system that counters the invasion of necrotrophic pathogen Pyt. porphyrae. However, the innate immunity genes of Pyr. yezoensis appear to be more ancient in origin compared to those in higher plants.

11 January 2023 in Plant Phenomics
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Journal Article
Open access
SCShuai Che
Shuai Che
GDGuoying Du
Guoying Du
XZXuefeng Zhong
Xuefeng Zhong
ZMZhaolan Mo
Zhaolan Mo
ZWZhendong Wang
Zhendong Wang
YMYunxiang Mao
Yunxiang Mao
Phycobilisomes and chlorophyll-a (Chla) play important roles in the photosynthetic physiology of red macroalgae and serve as the primary light-harvesting antennae and reaction center for photosystem II. Neopyropia is an economically important red macroalga widely cultivated in East Asian countries. The contents and ratios of 3 main phycobiliproteins and Chla are visible traits to evaluate its commercial quality. The traditional analytical methods used for measuring these components have several limitations. Therefore, a high-throughput, nondestructive, optical method based on hyperspectral imaging technology was developed for phenotyping the pigments phycoerythrin (PE), phycocyanin (PC), allophycocyanin (APC), and Chla in Neopyropia thalli in this study. The average spectra from the region of interest were collected at wavelengths ranging from 400 to 1000 nm using a hyperspectral camera. Following different preprocessing methods, 2 machine learning methods, partial least squares regression (PLSR) and support vector machine regression (SVR), were performed to establish the best prediction models for PE, PC, APC, and Chla contents. The prediction results showed that the PLSR model performed the best for PE (RTest2 = 0.96, MAPE = 8.31%, RPD = 5.21) and the SVR model performed the best for PC (RTest2 = 0.94, MAPE = 7.18%, RPD = 4.16) and APC (RTest2 = 0.84, MAPE = 18.25%, RPD = 2.53). Two models (PLSR and SVR) performed almost the same for Chla (PLSR: RTest2 = 0.92, MAPE = 12.77%, RPD = 3.61; SVR: RTest2 = 0.93, MAPE = 13.51%, RPD =3.60). Further validation of the optimal models was performed using field-collected samples, and the result demonstrated satisfactory robustness and accuracy. The distribution of PE, PC, APC, and Chla contents within a thallus was visualized according to the optimal prediction models. The results showed that hyperspectral imaging technology was effective for fast, accurate, and noninvasive phenotyping of the PE, PC, APC, and Chla contents of Neopyropia in situ. This could benefit the efficiency of macroalgae breeding, phenomics research, and other related applications.

1 September 2021 in Colloids and Surfaces A: Physicochemical and Engineering Aspects
Verified
Journal Article
Closed access
Mohamed SharafMohamed Sharaf
Mohamed Sharaf
HHH.I. Hamouda
H.I. Hamouda
SSSamah Shabana
Samah Shabana
Sohaib KhanSohaib Khan
Sohaib Khan
MAMuhammad Arif
Muhammad Arif
CLChenguang Liu
Chenguang Liu