Thomas P. Debray

Prof. Thomas P. Debray

University Medical Center Utrecht
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
7 April 2020 in BMJ
Verified
Journal Article
Open access
PDF file
LWLaure Wynants
Laure Wynants
BCBen Van Calster
Ben Van Calster
MBMarc Bonten
Marc Bonten
GCGary S Collins
Gary S Collins
TDThomas P. Debray
Thomas P. Debray
MSMaarten van Smeden
Maarten van Smeden
Objective: To review and appraise the validity and usefulness of published and preprint reports of prediction models for prognosis of patients with covid-19, and for detecting people in the general population at increased risk of covid-19 infection or being admitted to hospital or dying with the disease. Design: Living systematic review and critical appraisal by the covid-PRECISE (Precise Risk Estimation to optimise covid-19 Care for Infected or Suspected patients in diverse sEttings) group. Data sources: PubMed and Embase through Ovid, up to 17 February 2021, supplemented with arXiv, medRxiv, and bioRxiv up to 5 May 2020. Study selection: Studies that developed or validated a multivariable covid-19 related prediction model. Data extraction: At least two authors independently extracted data using the CHARMS (critical appraisal and data extraction for systematic reviews of prediction modelling studies) checklist; risk of bias was assessed using PROBAST (prediction model risk of bias assessment tool). Results: 126 978 titles were screened, and 412 studies describing 731 new prediction models or validations were included. Of these 731, 125 were diagnostic models (including 75 based on medical imaging) and the remaining 606 were prognostic models for either identifying those at risk of covid-19 in the general population (13 models) or predicting diverse outcomes in those individuals with confirmed covid-19 (593 models). Owing to the widespread availability of diagnostic testing capacity after the summer of 2020, this living review has now focused on the prognostic models. Of these, 29 had low risk of bias, 32 had unclear risk of bias, and 545 had high risk of bias. The most common causes for high risk of bias were inadequate sample sizes (n=408, 67%) and inappropriate or incomplete evaluation of model performance (n=338, 56%). 381 models were newly developed, and 225 were external validations of existing models. The reported C indexes varied between 0.77 and 0.93 in development studies with low risk of bias, and between 0.56 and 0.78 in external validations with low risk of bias. The Qcovid models, the PRIEST score, Carr’s model, the ISARIC4C Deterioration model, and the Xie model showed adequate predictive performance in studies at low risk of bias. Details on all reviewed models are publicly available at https://www.covprecise.org/ . Conclusion: Prediction models for covid-19 entered the academic literature to support medical decision making at unprecedented speed and in large numbers. Most published prediction model studies were poorly reported and at high risk of bias such that their reported predictive performances are probably optimistic. Models with low risk of bias should be validated before clinical implementation, preferably through collaborative efforts to also allow an investigation of the heterogeneity in their performance across various populations and settings. Methodological guidance, as provided in this paper, should be followed because unreliable predictions could cause more harm than benefit in guiding clinical decisions. Finally, prediction modellers should adhere to the TRIPOD (transparent reporting of a multivariable prediction model for individual prognosis or diagnosis) reporting guideline. Systematic review registration: Protocol https://osf.io/ehc47/ , registration https://osf.io/wy245 . Readers’ note: This article is the final version of a living systematic review that has been updated over the past two years to reflect emerging evidence. This version is update 4 of the original article published on 7 April 2020 ( BMJ 2020;369:m1328). Previous updates can be found as data supplements ( https://www.bmj.com/content/369/bmj.m1328/related#datasupp ). When citing this paper please consider adding the update number and date of access for clarity.

16 May 2016 in BMJ
Verified
Journal Article
Open access
PDF file
JDJohanna A A G Damen
Johanna A A G Damen
LHLotty Hooft
Lotty Hooft
ESEwoud Schuit
Ewoud Schuit
TDThomas P. Debray
Thomas P. Debray
GCGary S Collins
Gary S Collins
KMKarel G M Moons
Karel G M Moons
Objective To provide an overview of prediction models for risk of cardiovascular disease (CVD) in the general population. Design Systematic review. Data sources Medline and Embase until June 2013. Eligibility criteria for study selection Studies describing the development or external validation of a multivariable model for predicting CVD risk in the general population. Results 9965 references were screened, of which 212 articles were included in the review, describing the development of 363 prediction models and 473 external validations. Most models were developed in Europe (n=167, 46%), predicted risk of fatal or non-fatal coronary heart disease (n=118, 33%) over a 10 year period (n=209, 58%). The most common predictors were smoking (n=325, 90%) and age (n=321, 88%), and most models were sex specific (n=250, 69%). Substantial heterogeneity in predictor and outcome definitions was observed between models, and important clinical and methodological information were often missing. The prediction horizon was not specified for 49 models (13%), and for 92 (25%) crucial information was missing to enable the model to be used for individual risk prediction. Only 132 developed models (36%) were externally validated and only 70 (19%) by independent investigators. Model performance was heterogeneous and measures such as discrimination and calibration were reported for only 65% and 58% of the external validations, respectively. Conclusions There is an excess of models predicting incident CVD in the general population. The usefulness of most of the models remains unclear owing to methodological shortcomings, incomplete presentation, and lack of external validation and model impact studies. Rather than developing yet another similar CVD risk prediction model, in this era of large datasets, future research should focus on externally validating and comparing head-to-head promising CVD risk models that already exist, on tailoring or even combining these models to local settings, and investigating whether these models can be extended by addition of new predictors.

30 January 2019 in BMJ
Verified
Journal Article
Closed access
PDF file
RRRichard D Riley
Richard D Riley
KMKarel G M Moons
Karel G M Moons
KSKym I E Snell
Kym I E Snell
JEJoie Ensor
Joie Ensor
LHLotty Hooft
Lotty Hooft
TDThomas P. Debray
Thomas P. Debray
Prognostic factors are associated with the risk of future health outcomes in individuals with a particular health condition or some clinical start point (eg, a particular diagnosis). Research to identify genuine prognostic factors is important because these factors can help improve risk stratification, treatment, and lifestyle decisions, and the design of randomised trials. Although thousands of prognostic factor studies are published each year, often they are of variable quality and the findings are inconsistent. Systematic reviews and meta-analyses are therefore needed that summarise the evidence about the prognostic value of particular factors. In this article, the key steps involved in this review process are described.

3 September 2024 in BMJ
Verified
Journal Article
Open access
PDF file
OEOrestis Efthimiou
Orestis Efthimiou
MSMichael Seo
Michael Seo
KCKonstantina Chalkou
Konstantina Chalkou
TDThomas P. Debray
Thomas P. Debray
MEMatthias Egger
Matthias Egger
GSGeorgia Salanti
Georgia Salanti
Predicting future outcomes of patients is essential to clinical practice, with many prediction models published each year. Empirical evidence suggests that published studies often have severe methodological limitations, which undermine their usefulness. This article presents a step-by-step guide to help researchers develop and evaluate a clinical prediction model. The guide covers best practices in defining the aim and users, selecting data sources, addressing missing data, exploring alternative modelling options, and assessing model performance. The steps are illustrated using an example from relapsing-remitting multiple sclerosis. Comprehensive R code is also provided.

5 January 2017 in BMJ
Verified
Journal Article
Closed access
PDF file
TDThomas P. Debray
Thomas P. Debray
JDJohanna A A G Damen
Johanna A A G Damen
KSKym I E Snell
Kym I E Snell
JEJoie Ensor
Joie Ensor
LHLotty Hooft
Lotty Hooft
KMKarel G M Moons
Karel G M Moons
Validation of prediction models is highly recommended and increasingly common in the literature. A systematic review of validation studies is therefore helpful, with meta-analysis needed to summarise the predictive performance of the model being validated across different settings and populations. This article provides guidance for researchers systematically reviewing and meta-analysing the existing evidence on a specific prediction model, discusses good practice when quantitatively summarising the predictive performance of the model across studies, and provides recommendations for interpreting meta-analysis estimates of model performance. We present key steps of the meta-analysis and illustrate each step in an example review, by summarising the discrimination and calibration performance of the EuroSCORE for predicting operative mortality in patients undergoing coronary artery bypass grafting. #### Summary points Systematic reviews and meta-analysis are an important—if not the most important—source of information for evidence based medicine.1 Traditionally, they aim to summarise the results of publications or reports of primary treatment studies and (more recently) of primary diagnostic test accuracy studies. Compared to therapeutic intervention and diagnostic test accuracy studies, there is limited guidance on the conduct of systematic reviews and meta-analysis of primary prognosis studies. A common aim of primary prognostic studies concerns the development of so-called prognostic prediction models or indices. These models estimate the individualised probability or risk that a certain condition will occur in the future by combining information from multiple prognostic factors from an individual. Unfortunately, there is often …

1 March 2015 in Journal of Clinical Epidemiology
Verified
Journal Article
Open access
TDThomas P. Debray
Thomas P. Debray
YVYvonne Vergouwe
Yvonne Vergouwe
HKHendrik Koffijberg
Hendrik Koffijberg
DNDaan Nieboer
Daan Nieboer
ESEwout W. Steyerberg
Ewout W. Steyerberg
KMKarel G.M. Moons
Karel G.M. Moons
It is widely acknowledged that the performance of diagnostic and prognostic prediction models should be assessed in external validation studies with independent data from "different but related" samples as compared with that of the development sample. We developed a framework of methodological steps and statistical methods for analyzing and enhancing the interpretation of results from external validation studies of prediction models. We propose to quantify the degree of relatedness between development and validation samples on a scale ranging from reproducibility to transportability by evaluating their corresponding case-mix differences. We subsequently assess the models' performance in the validation sample and interpret the performance in view of the case-mix differences. Finally, we may adjust the model to the validation setting. We illustrate this three-step framework with a prediction model for diagnosing deep venous thrombosis using three validation samples with varying case mix. While one external validation sample merely assessed the model's reproducibility, two other samples rather assessed model transportability. The performance in all validation samples was adequate, and the model did not require extensive updating to correct for miscalibration or poor fit to the validation settings. The proposed framework enhances the interpretation of findings at external validation of prediction models.