Tome Eftimov

Dr. Tome Eftimov

Jožef Stefan Institute
orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 June 2017 in PLOS ONE
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Journal Article
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Tome EftimovTome Eftimov
Tome Eftimov
BSBarbara Koroušić Seljak
Barbara Koroušić Seljak
PKPeter Korošec
Peter Korošec
Evidence-based dietary information represented as unstructured text is a crucial information that needs to be accessed in order to help dietitians follow the new knowledge arrives daily with newly published scientific reports. Different named-entity recognition (NER) methods have been introduced previously to extract useful information from the biomedical literature. They are focused on, for example extracting gene mentions, proteins mentions, relationships between genes and proteins, chemical concepts and relationships between drugs and diseases. In this paper, we present a novel NER method, called drNER, for knowledge extraction of evidence-based dietary information. To the best of our knowledge this is the first attempt at extracting dietary concepts. DrNER is a rule-based NER that consists of two phases. The first one involves the detection and determination of the entities mention, and the second one involves the selection and extraction of the entities. We evaluate the method by using text corpora from heterogeneous sources, including text from several scientifically validated web sites and text from scientific publications. Evaluation of the method showed that drNER gives good results and can be used for knowledge extraction of evidence-based dietary recommendations.

1 November 2017 in Information Sciences
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Journal Article
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Tome EftimovTome Eftimov
Tome Eftimov
PKPeter Korošec
Peter Korošec
BSBarbara Koroušić Seljak
Barbara Koroušić Seljak

1 May 2020 in Applied Soft Computing
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Journal Article
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UŠUrban Škvorc
Urban Škvorc
Tome EftimovTome Eftimov
Tome Eftimov
PKPeter Korošec
Peter Korošec

26 May 2017 in Nutrients
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Tome EftimovTome Eftimov
Tome Eftimov
PKPeter Korošec
Peter Korošec
BSBarbara Koroušić Seljak
Barbara Koroušić Seljak
The European Food Safety Authority has developed a standardized food classification and description system called FoodEx2. It uses facets to describe food properties and aspects from various perspectives, making it easier to compare food consumption data from different sources and perform more detailed data analyses. However, both food composition data and food consumption data, which need to be linked, are lacking in FoodEx2 because the process of classification and description has to be manually performed—a process that is laborious and requires good knowledge of the system and also good knowledge of food (composition, processing, marketing, etc.). In this paper, we introduce a semi-automatic system for classifying and describing foods according to FoodEx2, which consists of three parts. The first involves a machine learning approach and classifies foods into four FoodEx2 categories, with two for single foods: raw (r) and derivatives (d), and two for composite foods: simple (s) and aggregated (c). The second uses a natural language processing approach and probability theory to describe foods. The third combines the result from the first and the second part by defining post-processing rules in order to improve the result for the classification part. We tested the system using a set of food items (from Slovenia) manually-coded according to FoodEx2. The new semi-automatic system obtained an accuracy of 89% for the classification part and 79% for the description part, or an overall result of 79% for the whole system.

12 February 2020 in IEEE Access
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Journal Article
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GPGorjan Popovski
Gorjan Popovski
BSBarbara Korousic Seljak
Barbara Korousic Seljak
Tome EftimovTome Eftimov
Tome Eftimov
As great amounts of food-related information is presented in the form of heterogeneous textual data, computer-based methods are useful to automatically extract such information. One way to do this is to utilize Named-Entity Recognition (NER) methods that are broadly used in computer science for information extraction. Despite the existence of numerous and well-versed NER methods in the biomedical domain, the domain of food science still remains scarcely resourced. In this paper, we provide an overview and a comparison of named-entity recognition methods in the food domain, which can be used for automated extraction of food information from text. Four methods are discussed: FoodIE, NCBO (SNOMED CT), NCBO (OntoFood), and NCBO (FoodON). We compare them using a benchmark data set that consists of 1000 manually annotated recipes initially obtained from Allrecipes, which is the largest social network focused on food. After analysing the results from the evaluation, it is evident that FoodIE obtains very promising results compared to the other food named-entity recognition methods taken into consideration.

14 August 2022
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Book Chapter
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AKAna Kostovska
Ana Kostovska
AJAnja Jankovic
Anja Jankovic
DVDiederick Vermetten
Diederick Vermetten
JNJacob de Nobel
Jacob de Nobel
Hao WangHao Wang
Hao Wang
CDCarola Doerr
Carola Doerr