Wound healing is a recovering process of damaged tissues by replacing dysfunctional injured cellular structures. Natural compounds for wound treatment have been widely used for centuries. Numerous published works provided reviews of natural compounds for wound healing applications, which separated the approaches based on different categories such as characteristics, bioactivities, and modes of action. However, current studies provide reviews of natural compounds that originated from only plants or animals. In this work, we provide a comprehensive review of natural compounds sourced from both plants and animals that target the different bioactivities of healing to promote wound resolution. The compounds were classified into four main groups (i.e., anti-inflammation, anti-oxidant, anti-bacterial, and collagen promotion), mostly studied in current literature from 1992 to 2022. Those compounds are listed in tables for readers to search for their origin, bioactivity, and targeting phases in wound healing. We also reviewed the trend in using natural compounds for wound healing.
14 February 2018 in Chemical Research in Toxicology
A generalized toxicity classification model for 7 different oxide nanomaterials is presented in this study. A data set extracted from multiple literature sources and screened by physicochemical property based quality scores were used for model development. Moreover, a few more preprocessing techniques, such as synthetic minority over-sampling technique, were applied to address the imbalanced class problem in the data set. Then, classification models using four different algorithms, such as generalized linear model, support vector machine, random forest, and neural network, were developed and their performances were compared to find the best performing preprocessing methods as well as algorithms. The neural network model built using the balanced data set was identified as the model with best predictive performance, while applicability domain was defined using k-nearest neighbours algorithm. The analysis of relative attribute importance for the built neural network model identified dose, formation enthalpy, exposure time, and hydrodynamic size as the four most important attributes. As the presented model can predict the toxicity of the nanomaterials in consideration of various experimental conditions, it has the advantage of having a broader and more general applicability domain than the existing quantitative structure-activity relationship model.
Development of nanotoxicity prediction models is becoming increasingly important in the risk assessment of engineered nanomaterials. However, it has significant obstacles caused by the wide heterogeneities of published literature in terms of data completeness and quality. Here, we performed a meta-analysis of 216 published articles on oxide nanoparticles using 14 attributes of physicochemical, toxicological and quantum-mechanical properties. Particularly, to improve completeness and quality of the extracted dataset, we adapted two preprocessing approaches: data gap-filling and physicochemical property based scoring. Performances of nano-SAR classification models revealed that the dataset with the highest score value resulted in the best predictivity with compromise in its applicability domain. The combination of physicochemical and toxicological attributes was proved to be more relevant to toxicity classification than quantum-mechanical attributes. Overall, by adapting these two preprocessing methods, we demonstrated that meta-analysis of nanotoxicity literatures could provide an effective alternative for the risk assessment of engineered nanomaterials.
Applications of machine learning techniques for the prediction of nanotoxicity are expected to reduce time and cost of nanosafety assessments. However, due to the rapid increases in literature data quantity and heterogeneity on nanomaterials, efficient screening of data based on their quality and completeness are becoming more important for the development of reliable nanostructure–activity relationship (nanoSAR) models. Herein, we have curated a nanosafety dataset of metallic NPs, with 2005 rows and 31 columns extracted from literature data mining of 63 published articles and gap filling by adapting data from manufacturer specification or references on the same nanomaterials. By using PChem scores based on physicochemical data quality and completeness, five datasets with different qualities and degrees of completeness were generated and used for the development of toxicity classification models of metallic NPs. Comparisons of these models, built with support vector machine and random forest algorithms, confirmed us that the datasets with higher quality and completeness (i.e., higher PChem score) produced better performing nanoSAR models than those with lower PChem scores. Further analysis of relative attribute importance showed that the physicochemical properties, core size and surface charge, and the experimental conditions of toxicity assays, dose and cell lines, are the four most important attributes to the toxicity of metallic NPs.
About Me
PhD student at Department of Chemistry, Hanyang University.
Research Student at Korea Research Institute of Chemical Technology.
PhD student at Department of Chemistry, Hanyang University.
Research Student at Korea Research Institute of Chemical Technology.