Vitor Miranda

Dr. Vitor Miranda

Universidade Estadual Paulista "Julio de Mesquita Filho" (UNESP)
orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2015 in Rodriguésia
Verified
Journal Article
Open access
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DZDaniela Cristina Zappi
Daniela Cristina Zappi
FFFabiana L. Ranzato Filardi
Fabiana L. Ranzato Filardi
PLPaula Leitman
Paula Leitman
VSVinícius C. Souza
Vinícius C. Souza
BWBruno M.T. Walter
Bruno M.T. Walter
CZCarmem S Zickel
Carmem S Zickel
An updated inventory of Brazilian seed plants is presented and offers important insights into the country's biodiversity. This work started in 2010, with the publication of the Plants and Fungi Catalogue, and has been updated since by more than 430 specialists working online. Brazil is home to 32,086 native Angiosperms and 23 native Gymnosperms, showing an increase of 3% in its species richness in relation to 2010. The Amazon Rainforest is the richest Brazilian biome for Gymnosperms, while the Atlantic Rainforest is the richest one for Angiosperms. There was a considerable increment in the number of species and endemism rates for biomes, except for the Amazon that showed a decrease of 2.5% of recorded endemics. However, well over half of Brazillian seed plant species (57.4%) is endemic to this territory. The proportion of life-forms varies among different biomes: trees are more expressive in the Amazon and Atlantic Rainforest biomes while herbs predominate in the Pampa, and lianas are more expressive in the Amazon, Atlantic Rainforest, and Pantanal. This compilation serves not only to quantify Brazilian biodiversity, but also to highlight areas where there information is lacking and to provide a framework for the challenge faced in conserving Brazil's unique and diverse flora.

1 December 2018 in Rodriguésia
Verified
Journal Article
Open access
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FFFabiana L. Ranzato Filardi
Fabiana L. Ranzato Filardi
FBFábio de Barros
Fábio de Barros
JBJosé Fernando A. Baumgratz
José Fernando A. Baumgratz
CBCarlos E.M. Bicudo
Carlos E.M. Bicudo
TCTaciana Barbosa Cavalcanti
Taciana Barbosa Cavalcanti
Yoannis DomínguezYoannis Domínguez
Yoannis Domínguez
The Global Strategy for Plant Conservation (GSPC) was established by the Conference of Parties in 2002 to decrease the loss of plant diversity, reduce poverty and contribute to sustainable development. To achieve this overarching goal, the GSPC has established a series of targets, one of which is to ensure that plant diversity is well understood, so that it can be effectively conserved and used in a sustainable manner. Brazil hosts more than 46,000 species of plants, algae and fungi, representing one of the most biodiverse countries on Earth, and playing a key role in the GSPC. To meet the GSPC goals of Target 1 and facilitate access to plant diversity, Brazil committed to preparing the List of Species of the Brazilian Flora (2008-2015) and the Brazilian Flora 2020 (2016-present). Managing all the information associated with such great biodiversity has proven to be an extremely challenging task. Here, we synthesize the history of these projects, focusing on the multidisciplinary and collaborative approach adopted to develop and manage the inclusion of all the knowledge generated though digital information systems. We further describe the methods used, challenges faced, and strategies adopted, as well as summarize advances to date and prospects for completing the Brazilian flora in 2020.

14 March 2018 in PLOS Biology
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Journal Article
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STScott A. Thomson
Scott A. Thomson
RPRichard L. Pyle
Richard L. Pyle
SAShane T. Ahyong
Shane T. Ahyong
MAMiguel Alonso-Zarazaga
Miguel Alonso-Zarazaga
JAJoe Ammirati
Joe Ammirati
HZHong-Zhang Zhou
Hong-Zhang Zhou

20 October 2016 in PLOS ONE
Verified
Journal Article
Open access
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SSSaura R. Silva
Saura R. Silva
YAYani Aranguren
Yani Aranguren
HPHelen Alves Penha
Helen Alves Penha
Daniel Guariz PinheiroDaniel Guariz Pinheiro
Daniel Guariz Pinheiro
CFCamila C Fernandes
Camila C Fernandes
Alessandro VaraniAlessandro Varani
Alessandro Varani
Lentibulariaceae is the richest family of carnivorous plants spanning three genera including Pinguicula, Genlisea, and Utricularia. Utricularia is globally distributed, and, unlike Pinguicula and Genlisea, has both aquatic and terrestrial forms. In this study we present the analysis of the chloroplast (cp) genome of the terrestrial Utricularia reniformis. U. reniformis has a standard cp genome of 139,725bp, encoding a gene repertoire similar to essentially all photosynthetic organisms. However, an exclusive combination of losses and pseudogenization of the plastid NAD(P)H-dehydrogenase (ndh) gene complex were observed. Comparisons among aquatic and terrestrial forms of Pinguicula, Genlisea, and Utricularia indicate that, whereas the aquatic forms retained functional copies of the eleven ndh genes, these have been lost or truncated in terrestrial forms, suggesting that the ndh function may be dispensable in terrestrial Lentibulariaceae. Phylogenetic scenarios of the ndh gene loss and recovery among Pinguicula, Genlisea, and Utricularia to the ancestral Lentibulariaceae cladeare proposed. Interestingly, RNAseq analysis evidenced that U. reniformis cp genes are transcribed, including the truncated ndh genes, suggesting that these are not completely inactivated. In addition, potential novel RNA-editing sites were identified in at least six U. reniformis cp genes, while none were identified in the truncated ndh genes. Moreover, phylogenomic analyses support that Lentibulariaceae is monophyletic, belonging to the higher core Lamiales clade, corroborating the hypothesis that the first Utricularia lineage emerged in terrestrial habitats and then evolved to epiphytic and aquatic forms. Furthermore, several truncated cp genes were found interspersed with U. reniformis mitochondrial and nuclear genome scaffolds, indicating that as observed in other smaller plant genomes, such as Arabidopsis thaliana, and the related and carnivorous Genlisea nigrocaulis and G. hispidula, the endosymbiotic gene transfer may also shape the U. reniformis genome in a similar fashion. Overall the comparative analysis of the U. reniformis cp genome provides new insight into the ndh genes and cp genome evolution of carnivorous plants from Lentibulariaceae family.

29 October 2013 in Plant Biology
Verified
Journal Article
Closed access
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DCD Clivati
D Clivati
GCG D Cordeiro
G D Cordeiro
Bartosz Jan PłachnoBartosz Jan Płachno
Bartosz Jan Płachno
Vitor MirandaVitor Miranda
Vitor Miranda

19 July 2017 in PLOS ONE
Verified
Journal Article
Open access
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SSSaura R. Silva
Saura R. Silva
DADanillo Alvarenga
Danillo Alvarenga
YAYani Aranguren
Yani Aranguren
HPHelen A. Penha
Helen A. Penha
CFCamila C. Fernandes
Camila C. Fernandes
Alessandro VaraniAlessandro Varani
Alessandro Varani
The carnivorous plants of the family Lentibulariaceae have attained recent attention not only because of their interesting lifestyle, but also because of their dynamic nuclear genome size. Lentibulariaceae genomes span an order of magnitude and include species with the smallest genomes in angiosperms, making them a powerful system to study the mechanisms of genome expansion and contraction. However, little is known about mitochondrial DNA (mtDNA) sequences of this family, and the evolutionary forces that shape this organellar genome. Here we report the sequencing and assembly of the complete mtDNA from the endemic terrestrial Brazilian species Utricularia reniformis. The 857,234bp master circle mitochondrial genome encodes 70 transcriptionaly active genes (42 protein-coding, 25 tRNAs and 3 rRNAs), covering up to 7% of the mtDNA. A ltrA-like protein related to splicing and mobility and a LAGLIDADG homing endonuclease have been identified in intronic regions, suggesting particular mechanisms of genome maintenance. RNA-seq analysis identified properties with putative diverse and important roles in genome regulation and evolution: 1) 672kbp (78%) of the mtDNA is covered by full-length reads; 2) most of the 243kbp intergenic regions exhibit transcripts; and 3) at least 69 novel RNA editing sites in the protein-coding genes. Additional genomic features are hypothetical ORFs (48%), chloroplast insertions, including truncated plastid genes that have been lost from the chloroplast DNA (5%), repeats (5%), relics of transposable elements mostly related to LTR retrotransposons (5%), and truncated mitovirus sequences (0.4%). Phylogenetic analysis based on 32 different Lamiales mitochondrial genomes corroborate that Lentibulariaceae is a monophyletic group. In summary, the U. reniformis mtDNA represents the eighth largest plant mtDNA described to date, shedding light on the genomic trends and evolutionary characteristics and phylogenetic history of the family Lentibulariaceae.