Yannick Berker

Dr. Yannick Berker

Siemens Healthineers, Forchheim, Bavaria, Germany
orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 April 2012 in Journal of Nuclear Medicine
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Yannick BerkerYannick Berker
Yannick Berker
JFJochen Franke
Jochen Franke
ASAndré Salomon
André Salomon
MPMoritz Palmowski
Moritz Palmowski
HDHenk C.W. Donker
Henk C.W. Donker
VSVolkmar Schulz
Volkmar Schulz
Accurate γ-photon attenuation correction (AC) is essential for quantitative PET/MRI as there is no simple relation between MR image intensity and attenuation coefficients. Attenuation maps (μ-maps) can be derived by segmenting MR images and assigning attenuation coefficients to the compartments. Ultrashort-echo-time (UTE) sequences have been used to separate cortical bone and air, and the Dixon technique has enabled differentiation between soft and adipose tissues. Unfortunately, sequential application of these sequences is time-consuming and complicates image registration. Methods: A UTE triple-echo (UTILE) MRI sequence is proposed, combining UTE sampling for bone detection and gradient echoes for Dixon water–fat separation in a radial 3-dimensional acquisition (repetition time, 4.1 ms; echo times, 0.09/1.09/2.09 ms; field strength, 3 T). Air masks are derived mainly from the phase information of the first echo; cortical bone is segmented using a dual-echo technique. Soft-tissue and adipose-tissue decomposition is achieved using a 3-point Dixon-like decomposition. Predefined linear attenuation coefficients are assigned to classified voxels to generate MRI-based μ-maps. The results of 6 patients are obtained by comparing μ-maps, reciprocal sensitivity maps, reconstructed PET images, and brain region PET activities based on either CT AC, two 3-class MRI AC techniques, or the proposed 4-class UTILE AC. Results: Using the UTILE MRI sequence, an acquisition time of 214 s was achieved for the head-and-neck region with 1.75-mm isotropic resolution, compared with 164 s for a single-echo UTE scan. MRI-based reciprocal sensitivity maps show a high correlation with those derived from CT scans (R2 = 0.9920). The same is true for PET activities (R2 = 0.9958). An overall voxel classification accuracy (compared with CT) of 81.1% was reached. Bone segmentation is inaccurate in complex regions such as the paranasal sinuses, but brain region activities in 48 regions across 6 patients show a high correlation after MRI-based and CT-based correction (R2 = 0.9956), with a regression line slope of 0.960. All overall correlations are higher and brain region PET activities more accurate in terms of mean and maximum deviations for the 4-class technique than for 3-class techniques. Conclusion: The UTILE MRI sequence enables the generation of MRI-based 4-class μ-maps without anatomic priors, yielding results more similar to CT-based results than can be obtained with 3-class segmentation only.

9 August 2012 in Magnetic Resonance Materials in Physics, Biology and Medicine
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VKVincent Keereman
Vincent Keereman
PMPieter Mollet
Pieter Mollet
Yannick BerkerYannick Berker
Yannick Berker
VSVolkmar Schulz
Volkmar Schulz
SVStefaan Vandenberghe
Stefaan Vandenberghe

14 January 2016 in Medical Physics
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Yannick BerkerYannick Berker
Yannick Berker
YLYusheng Li
Yusheng Li
The problem of attenuation correction (AC) for quantitative positron emission tomography (PET) had been considered solved to a large extent after the commercial availability of devices combining PET with computed tomography (CT) in 2001; single photon emission computed tomography (SPECT) has seen a similar development. However, stimulated in particular by technical advances toward clinical systems combining PET and magnetic resonance imaging (MRI), research interest in alternative approaches for PET AC has grown substantially in the last years. In this comprehensive literature review, the authors first present theoretical results with relevance to simultaneous reconstruction of attenuation and activity. The authors then look back at the early history of this research area especially in PET; since this history is closely interwoven with that of similar approaches in SPECT, these will also be covered. We then review algorithmic advances in PET, including analytic and iterative algorithms. The analytic approaches are either based on the Helgason–Ludwig data consistency conditions of the Radon transform, or generalizations of John's partial differential equation; with respect to iterative methods, we discuss maximum likelihood reconstruction of attenuation and activity (MLAA), the maximum likelihood attenuation correction factors (MLACF) algorithm, and their offspring. The description of methods is followed by a structured account of applications for simultaneous reconstruction techniques: this discussion covers organ‐specific applications, applications specific to PET/MRI, applications using supplemental transmission information, and motion‐aware applications. After briefly summarizing SPECT applications, we consider recent developments using emission data other than unscattered photons. In summary, developments using time‐of‐flight (TOF) PET emission data for AC have shown promising advances and open a wide range of applications. These techniques may both remedy deficiencies of purely MRI‐based AC approaches in PET/MRI and improve standalone PET imaging.

27 December 2022 in npj Precision Oncology
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HPHeike Peterziel
Heike Peterziel
NJNora Jamaladdin
Nora Jamaladdin
DEDina ElHarouni
Dina ElHarouni
XGXenia F. Gerloff
Xenia F. Gerloff
SHSonja Herter
Sonja Herter
IOIna Oehme
Ina Oehme
The international precision oncology program INFORM enrolls relapsed/refractory pediatric cancer patients for comprehensive molecular analysis. We report a two-year pilot study implementing ex vivo drug sensitivity profiling (DSP) using a library of 75–78 clinically relevant drugs. We included 132 viable tumor samples from 35 pediatric oncology centers in seven countries. DSP was conducted on multicellular fresh tumor tissue spheroid cultures in 384-well plates with an overall mean processing time of three weeks. In 89 cases (67%), sufficient viable tissue was received; 69 (78%) passed internal quality controls. The DSP results matched the identified molecular targets, including BRAF, ALK, MET, and TP53 status. Drug vulnerabilities were identified in 80% of cases lacking actionable (very) high-evidence molecular events, adding value to the molecular data. Striking parallels between clinical courses and the DSP results were observed in selected patients. Overall, DSP in clinical real-time is feasible in international multicenter precision oncology programs.


13 December 2021 in Proceedings of the National Academy of Sciences
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TSTjada A. Schult
Tjada A. Schult
MLMara J. Lauer
Mara J. Lauer
Yannick BerkerYannick Berker
Yannick Berker
Marcella Regina CardosoMarcella Regina Cardoso
Marcella Regina Cardoso
LVLindsey A. Vandergrift
Lindsey A. Vandergrift
LCLeo Cheng
Leo Cheng
Significance: Metabolomics predictive models constructed from high-resolution magic angle spinning (HRMAS) proton magnetic resonance spectroscopy ( 1 H MRS) data measured from 10 μL blood serum of human lung cancer patients collected prior to diagnosis reflect disease status and can be developed into a screening tool to triage patients with suspicious readings for advance imaging tests.