Yusuf Ceyhun Erdoğan

Mr. Yusuf Ceyhun Erdoğan

Sabancı University
orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 October 2021 in Free Radical Biology and Medicine
Verified
Journal Article
Closed access
Yusuf Ceyhun ErdoğanYusuf Ceyhun Erdoğan
Yusuf Ceyhun Erdoğan
HAHamza Yusuf Altun
Hamza Yusuf Altun
MSMelike Seçilmiş
Melike Seçilmiş
BABusra N. Ata
Busra N. Ata
GSGülşah Sevimli
Gülşah Sevimli
EEEmrah Eroglu
Emrah Eroglu

14 September 2021 in Biosensors
Verified
Journal Article
Open access
PDF file
MSMelike Seçilmiş
Melike Seçilmiş
HAHamza Yusuf Altun
Hamza Yusuf Altun
JPJohannes Pilic
Johannes Pilic
Yusuf Ceyhun ErdoğanYusuf Ceyhun Erdoğan
Yusuf Ceyhun Erdoğan
ZCZeynep Cokluk
Zeynep Cokluk
EEEmrah Eroglu
Emrah Eroglu
Multispectral live-cell imaging is an informative approach that permits detecting biological processes simultaneously in the spatial and temporal domain by exploiting spectrally distinct biosensors. However, the combination of fluorescent biosensors with distinct spectral properties such as different sensitivities, and dynamic ranges can undermine accurate co-imaging of the same analyte in different subcellular locales. We advanced a single-color multiparametric imaging method, which allows simultaneous detection of hydrogen peroxide (H2O2) in multiple cell locales (nucleus, cytosol, mitochondria) using the H2O2 biosensor HyPer7. Co-culturing of endothelial cells stably expressing differentially targeted HyPer7 biosensors paved the way for co-imaging compartmentalized H2O2 signals simultaneously in neighboring cells in a single experimental setup. We termed this approach COMPARE IT, which is an acronym for co-culture-based multiparametric imaging technique. Employing this approach, we detected lower H2O2 levels in mitochondria of endothelial cells compared to the cell nucleus and cytosol under basal conditions. Upon administering exogenous H2O2, the cytosolic and nuclear-targeted probes displayed similarly slow and moderate HyPer7 responses, whereas the mitochondria-targeted HyPer7 signal plateaued faster and reached higher amplitudes. Our results indicate striking differences in mitochondrial H2O2 accumulation of endothelial cells. Here, we present the method’s potential as a practicable and informative multiparametric live-cell imaging technique.

3 October 2025 in British Journal of Pharmacology
Verified
Journal Article
Open access
ALAnna Lischnig
Anna Lischnig
Yusuf Ceyhun ErdoğanYusuf Ceyhun Erdoğan
Yusuf Ceyhun Erdoğan
BGBenjamin Gottschalk
Benjamin Gottschalk
MGMichael Gruber
Michael Gruber
AGAndrea Groselj-Strele
Andrea Groselj-Strele
Roland MalliRoland Malli
Roland Malli
Background and Purpose: The calcium ion (Ca2+) is a versatile cellular messenger regulating a variety of biological processes. Compounds modulating subcellular Ca2+ signals hold substantial pharmacological potential. Advances in fluorescent biosensors have revolutionised Ca2+ imaging. However, co‐expression of targeted biosensors for simultaneous measurement of Ca2+ signals in multiple cellular compartments is still complicated by heterogeneous expression levels of the various sensors.Experimental Approach: We developed the ribosomal skipping‐based quad‐cistronic fluorescent biosensor system CARMEN, enabling high‐content Ca2+ imaging across three compartments. CARMEN allows proportional co‐expression of spectrally distinct Ca2+ biosensors: the near‐infrared Ca2+ biosensor for the cytosol (NIR‐GECO2G‐NES), the green Ca2+ biosensor for mitochondria (CEPIA3mt) and the red Ca2+ biosensor for the endoplasmic reticulum (R‐CEPIA1er), along with a Ca2+‐insensitive blue fluorescent protein targeted to the nucleus (NLS‐mTagBFP2), serving as a normalisation reference.Key Results: CARMEN allows spatiotemporal correlation of Ca2+ signals across the cytosol, endoplasmic reticulum and mitochondria, revealing distinct dynamics. We noted delayed mitochondrial Ca2+ uptake compared to the other compartments. We validated CARMEN across three cell types and tested two recently identified mitochondrial Ca2+ uniporter inhibitors (MCUis), MCUi4 and MCUi11, showcasing the potential of CARMEN for its application in pharmacological research. Our results show that while both MCUi4 and MCUi11 inhibited mitochondrial Ca2+ uptake in HeLa S3 cells, MCUi4 reduced cytosolic Ca2+ signals and oscillations, whereas MCUi11 had opposing effects.Conclusions and Implications: CARMEN is a powerful tool for real‐time, multiplexed analysis of compartment‐specific Ca2+ signals, with the potential for automation in high‐content drug screening.

11 January 2021 in Cancers
Verified
Journal Article
Open access
PDF file
Ruediger GoessRuediger Goess
Ruediger Goess
AMAyse Mutgan
Ayse Mutgan
Umut ÇalışanUmut Çalışan
Umut Çalışan
Yusuf Ceyhun ErdoğanYusuf Ceyhun Erdoğan
Yusuf Ceyhun Erdoğan
LRLei Ren
Lei Ren
IDI.Ekin Demir
I.Ekin Demir
Background: Pancreatic cancer‐associated diabetes mellitus (PC‐DM) is present in most patients with pancreatic cancer, but its pathogenesis remains poorly understood. Therefore, we aimed to characterize tumor infiltration in Langerhans islets in pancreatic cancer and determine its clinical relevance. Methods: Langerhans islet invasion was systematically analyzed in 68 patients with pancreatic ductal adenocarcinoma (PDAC) using histopathological examination and 3D in vitro migration assays were performed to assess chemoattraction of pancreatic cancer cells to islet cells. Results: Langerhans islet invasion was present in all patients. We found four different patterns of islet invasion: (Type I) peri‐insular invasion with tumor cells directly touching the boundary, but not penetrating the islet; (Type II) endo‐insular invasion with tumor cells inside the round islet; (Type III) distorted islet structure with complete loss of the round islet morphology; and (Type IV) adjacent cancer and islet cells with solitary islet cells encountered adjacent to cancer cells. Pancreatic cancer cells did not exhibit any chemoattraction to islet cells in 3D assays in vitro. Further, there was no clinical correlation of islet invasion using the novel Islet Invasion Severity Score (IISS), which includes all invasion patterns with the occurrence of diabetes mellitus. However, Type IV islet invasion was related to worsened overall survival in our cohort. Conclusions: We systematically analyzed, for the first time, islet invasion in human pancreatic cancer. Four different main patterns of islet invasion were identified. Diabetes mellitus was not related to islet invasion. However, more research on this prevailing feature of pancreatic cancer is needed to better understand underlying principles.

21 March 2023 in bioRxiv
Verified
Preprint
Open access
PDF file
JPJohannes Pilic
Johannes Pilic
BGBenjamin Gottschalk
Benjamin Gottschalk
BBbenjamin bourgeois
benjamin bourgeois
HHHansjoerg Habisch
Hansjoerg Habisch
ZKZhanat Koshenov
Zhanat Koshenov
Roland MalliRoland Malli
Roland Malli
Summary: Metabolic enzymes can adapt during energy stress, but the precise mechanisms and consequences of these adaptations remain understudied. Here, we discovered that hexokinase 1 (HK1), a key glycolytic enzyme, clusters into ring-like structures around mitochondria during energy stress. These HK1-rings constrict mitochondria at contact sites with the endoplasmic reticulum (ER) and prevent mitochondrial fission by displacing the dynamin-related protein 1 (Drp1) from mitochondrial constriction sites. Mechanistically, we identified that the lack of ATP and glucose-6-phosphate (G6P) promotes the clustering of HK1. Moreover, we found several mutations that are critical for the formation of HK1-rings. Utilizing these mutations, we could show that HK1-rings keep mitochondria connected and rewire cellular metabolism during energy stress. Our findings highlight that HK1 is a robust energy stress sensor that regulates the shape, connectivity and metabolic activity of mitochondria. Thus, the formation of HK1-rings may affect mitochondrial function in energy stress-related pathologies.

1 June 2018 in Pancreatology
Verified
Journal Article
Closed access
PDF file
AMAyse Ceren Mutgan
Ayse Ceren Mutgan
UCUmut Calisan
Umut Calisan
Yusuf Ceyhun ErdoğanYusuf Ceyhun Erdoğan
Yusuf Ceyhun Erdoğan
HFHelmut Friess
Helmut Friess
GCGüralp O. Ceyhan
Güralp O. Ceyhan
IDIhsan Ekin Demir
Ihsan Ekin Demir