Mohamed Esmail Karar

Prof. Mohamed Esmail Karar

Menoufia University
+1
orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 May 2020 in International Journal of Computer Assisted Radiology and Surgery
Verified
Journal Article
Open access
PDF file
RZRamy Zeineldin
Ramy Zeineldin
Mohamed Esmail KararMohamed Esmail Karar
Mohamed Esmail Karar
JCJan Coburger
Jan Coburger
CWChristian Rainer Wirtz
Christian Rainer Wirtz
OBOliver Burgert
Oliver Burgert
Purpose: Gliomas are the most common and aggressive type of brain tumors due to their infiltrative nature and rapid progression. The process of distinguishing tumor boundaries from healthy cells is still a challenging task in the clinical routine. Fluid-attenuated inversion recovery (FLAIR) MRI modality can provide the physician with information about tumor infiltration. Therefore, this paper proposes a new generic deep learning architecture, namely DeepSeg, for fully automated detection and segmentation of the brain lesion using FLAIR MRI data. Methods: The developed DeepSeg is a modular decoupling framework. It consists of two connected core parts based on an encoding and decoding relationship. The encoder part is a convolutional neural network (CNN) responsible for spatial information extraction. The resulting semantic map is inserted into the decoder part to get the full-resolution probability map. Based on modified U-Net architecture, different CNN models such as residual neural network (ResNet), dense convolutional network (DenseNet), and NASNet have been utilized in this study. Results: The proposed deep learning architectures have been successfully tested and evaluated on-line based on MRI datasets of brain tumor segmentation (BraTS 2019) challenge, including s336 cases as training data and 125 cases for validation data. The dice and Hausdorff distance scores of obtained segmentation results are about 0.81 to 0.84 and 9.8 to 19.7 correspondingly. Conclusion: This study showed successful feasibility and comparative performance of applying different deep learning models in a new DeepSeg framework for automated brain tumor segmentation in FLAIR MR images. The proposed DeepSeg is open source and freely available at https://github.com/razeineldin/DeepSeg/.

1 October 2021 in Alexandria Engineering Journal
Verified
Journal Article
Open access
Mohamed Esmail KararMohamed Esmail Karar
Mohamed Esmail Karar
FAFahad Alsunaydi
Fahad Alsunaydi
SASultan Albusaymi
Sultan Albusaymi
SASultan Alotaibi
Sultan Alotaibi

23 April 2022 in International Journal of Computer Assisted Radiology and Surgery
Verified
Journal Article
Open access
PDF file
RZRamy Zeineldin
Ramy Zeineldin
Mohamed Esmail KararMohamed Esmail Karar
Mohamed Esmail Karar
ZEZiad Elshaer
Ziad Elshaer
JCJan Coburger
Jan Coburger
CWChristian Rainer Wirtz
Christian Rainer Wirtz
FMFranziska Mathis-Ullrich
Franziska Mathis-Ullrich
Purpose: Artificial intelligence (AI), in particular deep neural networks, has achieved remarkable results for medical image analysis in several applications. Yet the lack of explainability of deep neural models is considered the principal restriction before applying these methods in clinical practice. Methods: In this study, we propose a NeuroXAI framework for explainable AI of deep learning networks to increase the trust of medical experts. NeuroXAI implements seven state-of-the-art explanation methods providing visualization maps to help make deep learning models transparent. Results: NeuroXAI has been applied to two applications of the most widely investigated problems in brain imaging analysis, i.e., image classification and segmentation using magnetic resonance (MR) modality. Visual attention maps of multiple XAI methods have been generated and compared for both applications. Another experiment demonstrated that NeuroXAI can provide information flow visualization on internal layers of a segmentation CNN. Conclusion: Due to its open architecture, ease of implementation, and scalability to new XAI methods, NeuroXAI could be utilized to assist radiologists and medical professionals in the detection and diagnosis of brain tumors in the clinical routine of cancer patients. The code of NeuroXAI is publicly accessible at https://github.com/razeineldin/NeuroXAI.

22 September 2020 in Complex & Intelligent Systems
Verified
Journal Article
Open access
PDF file
Mohamed Esmail KararMohamed Esmail Karar
Mohamed Esmail Karar
EHEzz Eldin Hemdan
Ezz Eldin Hemdan
MSmarwa ahmed shouman
marwa ahmed shouman
Computer-aided diagnosis (CAD) systems are considered a powerful tool for physicians to support identification of the novel Coronavirus Disease 2019 (COVID-19) using medical imaging modalities. Therefore, this article proposes a new framework of cascaded deep learning classifiers to enhance the performance of these CAD systems for highly suspected COVID-19 and pneumonia diseases in X-ray images. Our proposed deep learning framework constitutes two major advancements as follows. First, complicated multi-label classification of X-ray images have been simplified using a series of binary classifiers for each tested case of the health status. That mimics the clinical situation to diagnose potential diseases for a patient. Second, the cascaded architecture of COVID-19 and pneumonia classifiers is flexible to use different fine-tuned deep learning models simultaneously, achieving the best performance of confirming infected cases. This study includes eleven pre-trained convolutional neural network models, such as Visual Geometry Group Network (VGG) and Residual Neural Network (ResNet). They have been successfully tested and evaluated on public X-ray image dataset for normal and three diseased cases. The results of proposed cascaded classifiers showed that VGG16, ResNet50V2, and Dense Neural Network (DenseNet169) models achieved the best detection accuracy of COVID-19, viral (Non-COVID-19) pneumonia, and bacterial pneumonia images, respectively. Furthermore, the performance of our cascaded deep learning classifiers is superior to other multi-label classification methods of COVID-19 and pneumonia diseases in previous studies. Therefore, the proposed deep learning framework presents a good option to be applied in the clinical routine to assist the diagnostic procedures of COVID-19 infection.

23 March 2022 in Applied Sciences
Verified
Journal Article
Open access
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Mohamed Esmail KararMohamed Esmail Karar
Mohamed Esmail Karar
HSHazem Shehata
Hazem Shehata
OROmar Reyad
Omar Reyad
Remote monitoring of a fall condition or activities and daily life (ADL) of elderly patients has become one of the essential purposes for modern telemedicine. Internet of Things (IoT) and artificial intelligence (AI) techniques, including machine and deep learning models, have been recently applied in the medical field to automate the diagnosis procedures of abnormal and diseased cases. They also have many other applications, including the real-time identification of fall accidents in elderly patients. The goal of this article is to review recent research whose focus is to develop AI algorithms and methods of fall detection systems (FDS) in the IoT environment. In addition, the usability of different sensor types, such as gyroscopes and accelerometers in smartwatches, is described and discussed with the current limitations and challenges for realizing successful FDSs. The availability problem of public fall datasets for evaluating the proposed detection algorithms are also addressed in this study. Finally, this article is concluded by proposing advanced techniques such as lightweight deep models as one of the solutions and prospects of futuristic smart IoT-enabled systems for accurate fall detection in the elderly.

18 July 2023
Verified
Book Chapter
Closed access
PDF file
RZRamy Zeineldin
Ramy Zeineldin
MKMohamed E. Karar
Mohamed E. Karar
OBOliver Burgert
Oliver Burgert
FMFranziska Mathis-Ullrich
Franziska Mathis-Ullrich