Rashmi Panigrahi

Dr. Rashmi Panigrahi

orcid
Assistant Professor, Memorial University of Newfoundland

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
21 August 2017 in Plant Physiology
Verified
Journal Article
Open access
PDF file
KCKristian Mark P. Caldo
Kristian Mark P. Caldo
JAJeella Acedo
Jeella Acedo
RPRashmi Panigrahi
Rashmi Panigrahi
JVJohn C. Vederas
John C. Vederas
RWRandall J. Weselake
Randall J. Weselake
MLM Joanne Lemieux
M Joanne Lemieux
The N-terminal domain of Brassica diacylglycerol acyltransferase1 binds CoA and acyl-CoA, contributing to feedback inhibition and activation, respectively, of t

13 August 2020 in The Journal of Physiology
Verified
Journal Article
Open access
PDF file
WLWentong Long
Wentong Long
MFMohammad Fatehi
Mohammad Fatehi
SSShubham Soni
Shubham Soni
RPRashmi Panigrahi
Rashmi Panigrahi
KPKoenraad Philippaert
Koenraad Philippaert
PLPeter E. Light
Peter E. Light
Key points: 25‐Hydroxyvitamin D (25OHD) is a partial agonist of TRPV1 whereby 25OHD can weakly activate TRPV1 yet antagonize the stimulatory effects of the full TRPV1 agonists capsaicin and oleoyl dopamine. 25OHD binds to TRPV1 within the same vanilloid binding pocket as capsaicin. 25OHD inhibits the potentiating effects of PKC‐mediated TRPV1 activity. 25OHD reduces T‐cell activation and trigeminal neuron calcium signalling mediated by TRPV1 activity. These results provide evidence that TRPV1 is a novel receptor for the biological actions of vitamin D in addition to the well‐documented effects of vitamin D upon the nuclear vitamin D receptor. The results may have important implications for our current understanding of certain diseases where TRPV1 and vitamin D deficiency have been implicated, such as chronic pain and autoimmune diseases, such as type 1 diabetes. The capsaicin receptor TRPV1 plays an important role in nociception, inflammation and immunity and its activity is regulated by exogenous and endogenous lipophilic ligands. As vitamin D is lipophilic and involved in similar biological processes as TRPV1, we hypothesized that it directly regulates TRPV1 activity and function. Our calcium imaging and electrophysiological data demonstrate that vitamin D (25‐hydroxyvitamin D (25OHD) and 1,25‐hydroxyvitamin D (1,25OHD)) can weakly activate TRPV1 at physiologically relevant concentrations (100 nM). Furthermore, both 25OHD and 1,25OHD can inhibit capsaicin‐induced TRPV1 activity (IC50 = 34.3 ± 0.2 and 11.5 ± 0.9 nM, respectively), but not pH‐induced TRPV1 activity, suggesting that vitamin D interacts with TRPV1 in the same region as the TRPV1 agonist capsaicin. This hypothesis is supported by our in silico TRPV1 structural modelling studies, which place 25OHD in the same binding region as capsaicin. 25OHD also attenuates PKC‐dependent TRPV1 potentiation via interactions with a known PKC phospho‐acceptor residue in TRPV1. To provide evidence for a physiological role for the interaction of vitamin D with TRPV1, we employed two different cellular models known to express TRPV1: mouse CD4+ T‐cells and trigeminal neurons. Our results indicate that 25OHD reduces TRPV1‐induced cytokine release from T‐cells and capsaicin‐induced calcium activity in trigeminal neurons. In summary, we provide evidence that vitamin D is a novel endogenous regulator of TRPV1 channel activity that may play an important physiological role in addition to its known effects through the canonical nuclear vitamin D receptor pathway.

18 March 2010 in PLOS ONE
Verified
Journal Article
Open access
PDF file
BLBhushan Lokesh
Bhushan Lokesh
RPRashmi Panigrahi
Rashmi Panigrahi
BABhat S Amruta
Bhat S Amruta
DSDharmaiah Srisathiyanarayanan
Dharmaiah Srisathiyanarayanan
MMMathur R N Murthy
Mathur R N Murthy
HSHandanahal S Savithri
Handanahal S Savithri
Groundnut bud necrosis virus (GBNV), a member of genus Tospovirus in the family Bunyaviridae, infects a large number of leguminosae and solanaceae plants in India. With a view to elucidate the function of nonstructural protein, NSs encoded by the small RNA genome (S RNA), the NSs protein of GBNV- tomato (Karnataka) [1] was over-expressed in E. coli and purified by Ni-NTA chromatography. The purified rNSs protein exhibited an RNA stimulated NTPase activity. Further, this activity was metal ion dependent and was inhibited by adenosine 5′ (β, γ imido) triphosphate, an ATP analog. The rNSs could also hydrolyze dATP. Interestingly, in addition to the NTPase and dATPase activities, the rNSs exhibited ATP independent 5′ RNA/DNA phosphatase activity that was completely inhibited by AMP. The 5′ α phosphate could be removed from ssDNA, ssRNA, dsDNA and dsRNA thus confirming that rNSs has a novel 5′ α phosphatase activity. K189A mutation in the Walker motif A (GxxxxGKT) resulted in complete loss of ATPase activity, but the 5′ phosphatase activity was unaffected. On the other hand, D159A mutation in the Walker motif B (DExx) resulted in partial loss of both the activities. These results demonstrate for the first time that NSs is a bifunctional enzyme, which could participate in viral movement, replication or in suppression of the host defense mechanism.

1 July 2018 in Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
Verified
Journal Article
Closed access
JLJihong Lian
Jihong Lian
WBWesam Bahitham
Wesam Bahitham
RPRashmi Panigrahi
Rashmi Panigrahi
RNRandal Nelson
Randal Nelson
LLLena Li
Lena Li
RLRichard Lehner
Richard Lehner

18 November 2022 in Nature Communications
Verified
Journal Article
Open access
PDF file
HKHyeong Jin Kim
Hyeong Jin Kim
MBMazzen Black
Mazzen Black
RERoss A. Edwards
Ross A. Edwards
FPFlora Peillard-Fiorente
Flora Peillard-Fiorente
RPRashmi Panigrahi
Rashmi Panigrahi
MGMark Glover
Mark Glover
The ProQ/FinO family of RNA binding proteins mediate sRNA-directed gene regulation throughout gram-negative bacteria. Here, we investigate the structural basis for RNA recognition by ProQ/FinO proteins, through the crystal structure of the ProQ/FinO domain of the Legionella pneumophila DNA uptake regulator, RocC, bound to the transcriptional terminator of its primary partner, the sRNA RocR. The structure reveals specific recognition of the 3’ nucleotide of the terminator by a conserved pocket involving a β-turn-α-helix motif, while the hairpin portion of the terminator is recognized by a conserved α-helical N-cap motif. Structure-guided mutagenesis reveals key RNA contact residues that are critical for RocC/RocR to repress the uptake of environmental DNA in L. pneumophila. Structural analysis and RNA binding studies reveal that other ProQ/FinO domains also recognize related transcriptional terminators with different specificities for the length of the 3’ ssRNA tail.

2 March 2017 in ACS Chemical Biology
Verified
Journal Article
Closed access
OSOlivier-Mohamad Soueidan
Olivier-Mohamad Soueidan
TSThomas W. Scully
Thomas W. Scully
JKJatinder Kaur
Jatinder Kaur
RPRashmi Panigrahi
Rashmi Panigrahi
ABAlexandr Belovodskiy
Alexandr Belovodskiy
FWFrederick West
Frederick West