Constructed wetlands are one of the best technologies for wastewater treatment in small towns, small businesses or farms and/or livestock breeding. In this work, a wastewater depuration ecological system implemented in a hybrid constructed wetland to remove nutrients and organic matter from small urban agglomerations is studied. It comprises two processing stages: a primary treatment carried out in two hydrolytic up-flow sludge bed digesters working in parallel and a secondary one made up of two vertical flow constructed wetlands, which are alternatively used, followed by a horizontal flow constructed wetland. An internal recirculation system connects the output of the vertical flow constructed wetlands to the input of the hydrolytic up-flow sludge bed digesters with the aim of promoting the nitrification-denitrification process. High nutrients and organic matter removal efficiencies were observed when treating highly polluted wastewater from an animal farm. Therefore, this ecological depuration system, designed with an internal recirculation to enhance nitrogen reduction, may be considered an efficient alternative to treat wastewater from small urban agglomerations and diffuse contamination from agricultural industries and livestock farms polluting surface waters with nitrates, which may cause serious environmental problems, such as eutrophication.