Maarit Karonen

Dr. Maarit Karonen

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Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 January 2011 in Functional Ecology
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Journal Article
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Juha-Pekka SalminenJuha-Pekka Salminen
Juha-Pekka Salminen
Maarit KaronenMaarit Karonen
Maarit Karonen
Summary: 1. Tannins are one of the most studied groups of plant secondary metabolites in research related to chemical ecology. They are traditionally thought to form an important factor of plant defence against herbivorous insects. 2. For a long time, tannins’ anti‐herbivore activity was thought to derive from their protein precipitation capacity that rendered plant tissues non‐nutritious and unpalatable for herbivores. Recent evidence suggests that tannin activity cannot be explained quite this simply, as tannin oxidation should also be taken into account as a defence mechanism for plants. 3. Tannins show very high variability in their structures with several hundred unique molecules detected in plants. These molecules are unevenly distributed in the plant kingdom and only very seldom—if ever—do two plant species share the same tannin pool. In many cases tannin composition varies even within organs of the same plant species and individual. Still, the overall tannin composition of many plant species is as of yet unknown. 4. Chemical ecology of tannins is challenging due to its multi‐disciplinary nature. To facilitate research on tannins, we must provide ecologists and chemists with methodological and collaborative alternatives that enable the true and holistic investigation of all important questions that may arise from the field. So far this has not been possible with the tannin oxidation hypothesis, since simple and widely usable methods have not been available. 5. The aim of this review is to give a clear but detailed view of the chemical ecology of tannins and the methodology used to study them. In addition, we introduce a new method to estimate the oxidative activity of all types of tannins and other phenolics that might cause oxidative stress to herbivores. Hopefully our arguments and method will lead to clear changes in the approaches we take to tannins and their exciting biological activities, and we will witness a new era of flourishing and productive research in the chemical ecology of tannins.

1 September 2004 in Journal of Chemical Ecology
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Journal Article
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Juha-Pekka SalminenJuha-Pekka Salminen
Juha-Pekka Salminen
TRTomas Roslin
Tomas Roslin
Maarit KaronenMaarit Karonen
Maarit Karonen
JSJari Sinkkonen
Jari Sinkkonen
KPKalevi Pihlaja
Kalevi Pihlaja
PPPertti Pulkkinen
Pertti Pulkkinen

7 November 2022 in Journal of Chemical Theory and Computation
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Journal Article
Open access
FGFabian Grünewald
Fabian Grünewald
MPMats H. Punt
Mats H. Punt
EJElizabeth E. Jefferys
Elizabeth E. Jefferys
PVPetteri A. Vainikka
Petteri A. Vainikka
MKMelanie König
Melanie König
SMSiewert-Jan Marrink
Siewert-Jan Marrink
The Martini 3 force field is a full reparametrization of the Martini coarse-grained model for biomolecular simulations. Due to the improved interaction balance, it allows for a more accurate description of condensed phase systems. In the present work, we develop a consistent strategy to parametrize carbohydrate molecules accurately within the framework of Martini 3. In particular, we develop a canonical mapping scheme which decomposes arbitrarily large carbohydrates into a limited number of fragments. Bead types for these fragments have been assigned by matching physicochemical properties of mono- and disaccharides. In addition, guidelines for assigning bonds, angles, and dihedrals were developed. These guidelines enable a more accurate description of carbohydrate conformations than in the Martini 2 force field. We show that models obtained with this approach are able to accurately reproduce osmotic pressures of carbohydrate water solutions. Furthermore, we provide evidence that the model differentiates correctly the solubility of the polyglucoses dextran (water-soluble) and cellulose (water insoluble but soluble in ionic liquids). Finally, we demonstrate that the new building blocks can be applied to glycolipids. We show they are able to reproduce membrane properties and induce binding of peripheral membrane proteins. These test cases demonstrate the validity and transferability of our approach.

1 October 2005 in Journal of Agricultural and Food Chemistry
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Journal Article
Closed access
SVSatu Vuorela
Satu Vuorela
HSHanna Salminen
Hanna Salminen
MMMaija Mäkelä
Maija Mäkelä
RKRiitta Kivikari
Riitta Kivikari
Maarit KaronenMaarit Karonen
Maarit Karonen
Marina HeinonenMarina Heinonen
Marina Heinonen

4 October 2006 in Journal of Chemical Ecology
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Journal Article
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RBRaymond V. Barbehenn
Raymond V. Barbehenn
CJChristopher P. Jones
Christopher P. Jones
AHAnn E. Hagerman
Ann E. Hagerman
Maarit KaronenMaarit Karonen
Maarit Karonen
Juha-Pekka SalminenJuha-Pekka Salminen
Juha-Pekka Salminen

1 September 2004 in Analytica Chimica Acta
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Journal Article
Closed access
Maarit KaronenMaarit Karonen
Maarit Karonen
JLJyrki Loponen
Jyrki Loponen
Vladimir OssipovVladimir Ossipov
Vladimir Ossipov
KPKalevi Pihlaja
Kalevi Pihlaja