Alexey Popov

Prof. Alexey Popov

VTT Technical Research Centre of Finland, Kaitovayla 1, 90590 Oulu, Finland
orcid

Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 July 2005 in Journal of Physics D: Applied Physics
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Journal Article
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Alexey PopovAlexey Popov
Alexey Popov
APA V Priezzhev
A V Priezzhev
JLJ Lademann
J Lademann
RMR Myllylä
R Myllylä

26 February 2020 in Cells
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Journal Article
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RZRuixue Zhu
Ruixue Zhu
TATatiana Avsievich
Tatiana Avsievich
Alexey PopovAlexey Popov
Alexey Popov
Igor MeglinskiIgor Meglinski
Igor Meglinski
Optical tweezers (OTs) are innovative instruments utilized for the manipulation of microscopic biological objects of interest. Rapid improvements in precision and degree of freedom of multichannel and multifunctional OTs have ushered in a new era of studies in basic physical and chemical properties of living tissues and unknown biomechanics in biological processes. Nowadays, OTs are used extensively for studying living cells and have initiated far-reaching influence in various fundamental studies in life sciences. There is also a high potential for using OTs in haemorheology, investigations of blood microcirculation and the mutual interplay of blood cells. In fact, in spite of their great promise in the application of OTs-based approaches for the study of blood, cell formation and maturation in erythropoiesis have not been fully explored. In this review, the background of OTs, their state-of-the-art applications in exploring single-cell level characteristics and bio-rheological properties of mature red blood cells (RBCs) as well as the OTs-assisted studies on erythropoiesis are summarized and presented. The advance developments and future perspectives of the OTs’ application in haemorheology both for fundamental and practical in-depth studies of RBCs formation, functional diagnostics and therapeutic needs are highlighted.

6 January 2021 in IEEE Transactions on Medical Imaging
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Journal Article
Open access
Viktor DreminViktor Dremin
Viktor Dremin
ZMZbignevs Marcinkevics
Zbignevs Marcinkevics
EZEvgeny Zherebtsov
Evgeny Zherebtsov
Alexey PopovAlexey Popov
Alexey Popov
AGAndris Grabovskis
Andris Grabovskis
ABAlexander Bykov
Alexander Bykov
Aging and diabetes lead to protein glycation and cause dysfunction of collagen-containing tissues. The accompanying structural and functional changes of collagen significantly contribute to the development of various pathological malformations affecting the skin, blood vessels, and nerves, causing a number of complications, increasing disability risks and threat to life. In fact, no methods of non-invasive assessment of glycation and associated metabolic processes in biotissues or prediction of possible skin complications, e.g., ulcers, currently exist for endocrinologists and clinical diagnosis. In this publication, utilizing emerging photonics-based technology, innovative solutions in machine learning, and definitive physiological characteristics, we introduce a diagnostic approach capable of evaluating the skin complications of diabetes mellitus at the very earlier stage. The results of the feasibility studies, as well as the actual tests on patients with diabetes and healthy volunteers, clearly show the ability of the approach to differentiate diabetic and control groups. Furthermore, the developed in-house polarization-based hyperspectral imaging technique accomplished with the implementation of the artificial neural network provides new horizons in the study and diagnosis of age-related diseases.

5 September 2019 in Cells
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AIAnna A. Igolkina
Anna A. Igolkina
AZArsenii Zinkevich
Arsenii Zinkevich
KKKristina Karandasheva
Kristina Karandasheva
Alexey PopovAlexey Popov
Alexey Popov
DNDaniil Nikitin
Daniil Nikitin
Anton BuzdinAnton Buzdin
Anton Buzdin
Background: Transposons are selfish genetic elements that self-reproduce in host DNA. They were active during evolutionary history and now occupy almost half of mammalian genomes. Close insertions of transposons reshaped structure and regulation of many genes considerably. Co-evolution of transposons and host DNA frequently results in the formation of new regulatory regions. Previously we published a concept that the proportion of functional features held by transposons positively correlates with the rate of regulatory evolution of the respective genes. Methods: We ranked human genes and molecular pathways according to their regulatory evolution rates based on high throughput genome-wide data on five histone modifications (H3K4me3, H3K9ac, H3K27ac, H3K27me3, H3K9me3) linked with transposons for five human cell lines. Results: Based on the total of approximately 1.5 million histone tags, we ranked regulatory evolution rates for 25075 human genes and 3121 molecular pathways and identified groups of molecular processes that showed signs of either fast or slow regulatory evolution. However, histone tags showed different regulatory patterns and formed two distinct clusters: promoter/active chromatin tags (H3K4me3, H3K9ac, H3K27ac) vs. heterochromatin tags (H3K27me3, H3K9me3). Conclusion: In humans, transposon-linked histone marks evolved in a coordinated way depending on their functional roles.

24 June 2019 in Biomedical Optics Express
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EZEvgeny Zherebtsov
Evgeny Zherebtsov
Viktor DreminViktor Dremin
Viktor Dremin
Alexey PopovAlexey Popov
Alexey Popov
ADAlexander Doronin
Alexander Doronin
DKDaria Kurakina
Daria Kurakina
ABAlexander Bykov
Alexander Bykov
We developed a compact, hand-held hyperspectral imaging system for 2D neural network-based visualization of skin chromophores and blood oxygenation. State-of-the-art micro-optic multichannel matrix sensor combined with the tunable Fabry-Perot micro interferometer enables a portable diagnostic device sensitive to the changes of the oxygen saturation as well as the variations of blood volume fraction of human skin. Generalized object-oriented Monte Carlo model is used extensively for the training of an artificial neural network utilized for the hyperspectral image processing. In addition, the results are verified and validated via actual experiments with tissue phantoms and human skin in vivo. The proposed approach enables a tool combining both the speed of an artificial neural network processing and the accuracy and flexibility of advanced Monte Carlo modeling. Finally, the results of the feasibility studies and the experimental tests on biotissue phantoms and healthy volunteers are presented.

20 April 2018 in Biomedical Optics Express
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MBMariia Borovkova
Mariia Borovkova
MKMikhail Khodzitsky
Mikhail Khodzitsky
PDPetr Demchenko
Petr Demchenko
OCOlga Cherkasova
Olga Cherkasova
Alexey PopovAlexey Popov
Alexey Popov
Igor MeglinskiIgor Meglinski
Igor Meglinski
We apply terahertz time-domain spectroscopy for the quantitative non-invasive assessment of the water content in biological samples, such as Carpinus caroliniana tree leaves and pork muscles. The developed experimental terahertz time-domain spectroscopy system operates both in transmission and reflection modes. The Landau-Looyenga-Lifshitz-based model is used for the calculation of the water concentration within the samples. The results of the water concentration measurements are compared with the results of the gravimetric measurements. The obtained results show that the water content in biological samples can be measured non-invasively, with a high accuracy, utilizing terahertz waves in transmission and reflection modes.