Plant breeding has been very successful in developing improved varieties using conventional tools and methodologies. Nowadays, the availability of genomic tools and resources is leading to a new revolution of plant breeding, as they facilitate the study of the genotype and its relationship with the phenotype, in particular for complex traits. Next Generation Sequencing (NGS) technologies are allowing the mass sequencing of genomes and transcriptomes, which is producing a vast array of genomic information. The analysis of NGS data by means of bioinformatics developments allows discovering new genes and regulatory sequences and their positions, and makes available large collections of molecular markers. Genome-wide expression studies provide breeders with an understanding of the molecular basis of complex traits. Genomic approaches include TILLING and EcoTILLING, which make possible to screen mutant and germplasm collections for allelic variants in target genes. Re-sequencing of genomes is very useful for the genome-wide discovery of markers amenable for high-throughput genotyping platforms, like SSRs and SNPs, or the construction of high density genetic maps. All these tools and resources facilitate studying the genetic diversity, which is important for germplasm management, enhancement and use. Also, they allow the identification of markers linked to genes and QTLs, using a diversity of techniques like bulked segregant analysis (BSA), fine genetic mapping, or association mapping. These new markers are used for marker assisted selection, including marker assisted backcross selection, 'breeding by design', or new strategies, like genomic selection. In conclusion, advances in genomics are providing breeders with new tools and methodologies that allow a great leap forward in plant breeding, including the 'superdomestication' of crops and the genetic dissection and breeding for complex traits.

Chlorogenic acid (5-O-caffeoyl-quinic acid; CGA) is an ester of caffeic acid and (-)-quinic acid with many beneficial properties for human health, such as anti-oxidant, anti-inflammatory, cardioprotective, anti-carcinogenic, anti-obesity, and anti-diabetic properties. This has raised an interest for the development of new crop cultivars with increased CGA content. One of the crops with higher CGA content is eggplant (Solanum melongena). There is a wide diversity for CGA content in cultivated eggplant germplasm, which is influenced by the fruit developmental stage, storage conditions, and environmental factors. Therefore, appropriate experimental designs are required for an efficient breeding. Several strategies are proposed for breeding for high CGA content such as intraspecific variation, selection among accessions, development of hybrids and lines with good agronomic and commercial characteristics, or introgression of the high CGA trait in élite lines. Some wild relatives, like S. incanum, present higher CGA contents than those of eggplant. Interspecific hybridization can be used to introgress favorable alleles from the wild species into the genetic background of cultivated eggplant. Fruit flesh browning, as a result of CGA oxidation by polyphenol oxidases, could be a side effect of increasing the CGA content in eggplant. However, experimental results indicate that the relationship between CGA content and fruit flesh browning is low or moderate. Furthermore, selection for low polyphenol oxidase activity might result in reduced fruit flesh browning. Overall, the available data suggest that the development of eggplant cultivars with improved functional quality resulting from a higher CGA content is feasible.

Loss of pollen-S function in Prunus self-compatible mutants has recently been associated with deletions or insertions in S-haplotype-specific F-box (SFB) genes. We have studied two self-compatible cultivars of apricot (Prunus armeniaca), Currot (S C S C) and Canino (S 2 S C), sharing the naturally occurring self-compatible (S C)-haplotype. Sequence analysis showed that whereas the S C-RNase is unaltered, a 358-bp insertion is found in the SFB C gene, resulting in the expression of a truncated protein. The alteration of this gene is associated with self-incompatibility (SI) breakdown, supporting previous evidence that points to SFB being the pollen-S gene of the Prunus SI S-locus. On the other hand, PCR analysis of progenies derived from Canino showed that pollen grains carrying the S 2-haplotype were also able to overcome the incompatibility barrier. However, alterations in the SFB 2 gene or evidence of pollen-S duplications were not detected. A new class of F-box genes encoding a previously uncharacterized protein with high sequence similarity (approximately 62%) to Prunus SFB proteins was identified in this work, but the available data rules them out of producing S-heteroallelic pollen and thus the cause of the pollen-part mutation. These results suggest that cv Canino has an additional mutation, not linked to the S-locus, which causes a loss of pollen-S activity when present in pollen. As a whole, these findings support the proposal that the S-locus products besides other S-locus independent factors are required for gametophytic SI in Prunus.

Wild relatives represent a source of variation for many traits of interest for eggplant ( Solanum melongena ) breeding, as well as for broadening the genetic base of this crop. However, interspecific hybridization with wild relatives has been barely used in eggplant breeding programs. As initiation of an introgression breeding program we performed 1424 interspecific hybridizations between six accessions of eggplant from the Occidental and Oriental groups and 19 accessions of 12 wild species from the primary ( Solanum incanum and Solanum insanum ), secondary ( Solanum anguivi , Solanum dasyphyllum , Solanum lichtensteinii , Solanum linnaeanum , Solanum pyracanthos , Solanum tomentosum , and Solanum violaceum ), and tertiary ( Solanum elaeagnifolium , Solanum sisymbriifolium , and Solanum torvum ) genepools. Fruit set, hybrid seed, and seed germination were obtained between Solanum melongena and all wild species of the primary and secondary genepools. The highest fruit set percentage and quantity of seeds per fruit were obtained with the two primary genepool species S. incanum and S. insanum as well as with some secondary genepool species, like S. anguivi , S. dasyphyllum , or S. lichtensteinii , although some differences among species were observed depending on the direction of the hybridization. For small-fruited wild species, the number of seeds per fruit was lower when using them as maternal parent. Regarding tertiary genepool species, fruit set was obtained only in interspecific hybridizations of eggplant with S. sisymbriifolium and S. torvum , although the fruit of the former were parthenocarpic. However, it was possible to rescue viable interspecific hybrids with S. torvum . In total we obtained 58 interspecific hybrid combinations (excluding reciprocals) between eggplant and wild relatives. Some differences were observed among S. melongena accessions in the degree of success of interspecific hybridization, so that the number of hybrid combinations obtained for each accession ranged between 7 (MEL2) and 16 (MEL1). Hybridity of putative interspecific hybrid plantlets was confirmed with a morphological trait (leaf prickliness) and 12 single nucleotide polymorphism markers. The results show that eggplant is amenable to interspecific hybridization with a large number of wild species, including tertiary genepool materials. These hybrid materials are the starting point for introgression breeding in eggplant and in some cases might also be useful as rootstocks for eggplant grafting.

Vegetables represent a major source of phenolic acids, powerful antioxidants characterized by an organic carboxylic acid function and which present multiple properties beneficial for human health. In consequence, developing new varieties with enhanced content in phenolic acids is an increasingly important breeding objective. Major phenolic acids present in vegetables are derivatives of cinnamic acid and to a lesser extent of benzoic acid. A large diversity in phenolic acids content has been found among cultivars and wild relatives of many vegetable crops. Identification of sources of variation for phenolic acids content can be accomplished by screening germplasm collections, but also through morphological characteristics and origin, as well as by evaluating mutations in key genes. Gene action estimates together with relatively high values for heritability indicate that selection for enhanced phenolic acids content will be efficient. Modern genomics and biotechnological strategies, such as QTL detection, candidate genes approaches and genetic transformation, are powerful tools for identification of genomic regions and genes with a key role in accumulation of phenolic acids in vegetables. However, genetically increasing the content in phenolic acids may also affect other traits important for the success of a variety. We anticipate that the combination of conventional and modern strategies will facilitate the development of a new generation of vegetable varieties with enhanced content in phenolic acids.