Zi-Ming Ren

Dr. Zi-Ming Ren

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 September 2022 in The Plant Journal
Verified
Journal Article
Open access
ZRZi-Ming Ren
Zi-Ming Ren
DZDong Zhang
Dong Zhang
CJChen Jiao
Chen Jiao
Danqing LiDanqing Li
Danqing Li
YWYun Wu
Yun Wu
Yiping XiaYiping Xia
Yiping Xia
SUMMARY: Vegetative propagation (VP) is an important practice for production in many horticultural plants. Sugar supply constitutes the basis of VP in bulb flowers, but the underlying molecular basis remains elusive. By performing a combined sequencing technologies coupled with ultra‐high performance liquid chromatography‐quadrupole time‐of‐flight mass spectrometry approach for metabolic analyses, we compared two Lycoris species with contrasting regeneration rates: high‐regeneration Lycoris sprengeri and low‐regeneration Lycoris aurea. A comprehensive multi‐omics analyses identified both expected processes involving carbohydrate metabolism and transcription factor networks, as well as the metabolic characteristics for each developmental stage. A higher abundance of the differentially expressed genes including those encoding ethylene responsive factors was detected at bulblet initiation stage compared to the late stage of bulblet development. High hexose‐to‐sucrose ratio correlated to bulblet formation across all the species examined, indicating its role in the VP process in Lycoris bulb. Importantly, a clear difference between cell wall invertase (CWIN)‐catalyzed sucrose unloading in high‐regeneration species and the sucrose synthase‐catalyzed pathway in low‐regeneration species was observed at the bulblet initiation stage, which was supported by findings from carboxyfluorescein tracing and quantitative real‐time PCR analyses. Collectively, the findings indicate a sugar‐mediated model of the regulation of VP in which high CWIN expression or activity may promote bulblet initiation via enhancing apoplasmic unloading of sucrose or sugar signals, whereas the subsequent high ratio of hexose‐to‐sucrose likely supports cell division characterized in the next phase of bulblet formation.

20 December 2021 in Plant Physiology
Verified
Journal Article
Open access
PDF file
HFHuiqi Fu
Huiqi Fu
JZJiayi Zhao
Jiayi Zhao
ZRZi-Ming Ren
Zi-Ming Ren
KYKe Yang
Ke Yang
CWChong Wang
Chong Wang
BLBing Liu
Bing Liu
Changes in environmental temperature affect multiple meiotic processes in flowering plants. Polyploid plants derived from whole-genome duplication (WGD) have enhanced genetic plasticity and tolerance to environmental stress but face challenges in organizing and segregating doubled chromosome sets. In this study, we investigated the impact of increased environmental temperature on male meiosis in autotetraploid Arabidopsis (Arabidopsis thaliana). Under low to mildly increased temperatures (5°C–28°C), irregular chromosome segregation universally occurred in synthetic autotetraploid Columbia-0 (Col-0). Similar meiotic lesions occurred in autotetraploid rice (Oryza sativa L.) and allotetraploid canola (Brassica napus cv Westar), but not in evolutionarily derived hexaploid wheat (Triticum aestivum). At extremely high temperatures, chromosome separation and tetrad formation became severely disordered due to univalent formation caused by the suppression of crossing-over. We found a strong correlation between tetravalent formation and successful chromosome pairing, both of which were negatively correlated with temperature elevation, suggesting that increased temperature interferes with crossing-over predominantly by impacting homolog pairing. We also showed that loading irregularities of axis proteins ASY1 and ASY4 co-localize on the chromosomes of the syn1 mutant and the heat-stressed diploid and autotetraploid Col-0, revealing that heat stress affects the lateral region of synaptonemal complex (SC) by impacting the stability of the chromosome axis. Moreover, we showed that chromosome axis and SC in autotetraploid Col-0 are more sensitive to increased temperature than those in diploid Arabidopsis. Taken together, our data provide evidence suggesting that WGD negatively affects the stability and thermal tolerance of meiotic recombination in newly synthetic autotetraploid Arabidopsis.

Verified
Journal Article
Open access
PDF file
ZRZi-Ming Ren
Zi-Ming Ren
YXYunchen Xu
Yunchen Xu
XLXuesi Lvy
Xuesi Lvy
DZDong Zhang
Dong Zhang
CGCong Gao
Cong Gao
Yiping XiaYiping Xia
Yiping Xia
Bulblet formation and development determine the quantitative and qualitative traits, respectively, of bulb yield for most flowering bulbs. For Lycoris species, however, the underlying molecular mechanism remains elusive. Here, clonal bulblets of Lycoris sprengeri (Ls) derived from the same probulb were used as explants to establish efficient and inefficient in vitro regeneration systems by adjusting the 6-benzyladenine (BA) concentrations in media. BA application did not change the biological processes among groups but led to earlier decreases in sucrose and total soluble sugar (TSS) contents. Correlation analyses showed that the BA treatments changed the interaction between carbohydrate and endogenous hormone contents during bulblet regeneration. We found that two sucrose degradation enzyme-related genes, cell wall invertase (CWIN) and sucrose synthase, exhibited exactly opposite expression patterns during the competence stage. In addition, the regeneration system that obtained more bulblets showed significantly higher expression of LsCWIN2 than those that obtained fewer bulblets. Our data demonstrate the essential role of BA in accelerating sucrose degradation and the selection of a dominant sucrose cleavage pattern at the competence stage of in vitro bulblet regeneration. We propose that a relatively active CWIN-catalyzed pathway at the competence stage might promote bulblet regeneration, thus influencing bulb yield.

XZXuan Zhang
Xuan Zhang
HHHaoying Han
Haoying Han
Lin QiaoLin Qiao
Lin Qiao
JZJingwei Zhuang
Jingwei Zhuang
ZRZi-Ming Ren
Zi-Ming Ren
Yiping XiaYiping Xia
Yiping Xia
Emotional responses are significant for understanding public perceptions of urban green space (UGS) and can be used to inform proposals for optimal urban design strategies to enhance public emotional health in the times of COVID-19. However, most empirical studies fail to consider emotion-oriented landscape assessments under dynamic perspectives despite the fact that individually observed sceneries alter with angle. To close this gap, a real-time sentimental-based landscape assessment framework is developed, integrating facial expression recognition with semantic segmentation of changing landscapes. Furthermore, a case study using panoramic videos converted from Google Street View images to simulate changing scenes was used to test the viability of this framework, resulting in five million big data points. The result of this study shows that through the collaboration of deep learning algorithms, finer visual variables were classified, subtle emotional responses were tracked, and better regression results for valence and arousal were obtained. Among all the predictors, the proportion of grass was the most significant predictor for emotional perception. The proposed framework is adaptable and human-centric, and it enables the instantaneous emotional perception of the built environment by the general public as a feedback survey tool to aid urban planners in creating UGS that promote emotional well-being.

1 March 2021 in Scientia Horticulturae
Verified
Journal Article
Closed access
ZRZi-Ming Ren
Zi-Ming Ren
YLYefan Lin
Yefan Lin
XLXuesi Lv
Xuesi Lv
JZJunlin Zhang
Junlin Zhang
DZDong Zhang
Dong Zhang
Yiping XiaYiping Xia
Yiping Xia

Verified
Journal Article
Open access
PDF file
QCQi Cui
Qi Cui
XLXinran Li
Xinran Li
SHShanshan Hu
Shanshan Hu
HYHuaqian You
Huaqian You
AAAnn Abozeid
Ann Abozeid
AQAnhua Qin
Anhua Qin
Gray mold caused by Botrytis elliptica is one of the most determinative factors of lily growth and has become a major threat to lily productivity. However, the nature of the lily B. elliptica interaction remains largely unknown. Here, comparative transcriptomic and metabolomic were used to investigate the defense responses of resistant (‘Sorbonne’) and susceptible (‘Tresor’) lily cultivars to B. elliptica infection at 24 hpi. In total, 1326 metabolites were identified in ‘Sorbonne’ and ‘Tresor’ after infection, including a large number of phenylpropanoids. Specifically, the accumulation of four phenylpropanes, including eriodictyol, hesperetin, ferulic acid, and sinapyl alcohol, was significantly upregulated in the B. elliptica-infected ‘Sorbonne’ compared with the infected ‘Tresor’, and these phenylpropanes could significantly inhibit B. elliptica growth. At the transcript level, higher expression levels of F3′M, COMT, and CAD led to a higher content of resistance-related phenylpropanes (eriodictyol, ferulic acid, and sinapyl alcohol) in ‘Sorbonne’ following B. elliptica infection. It can be assumed that these phenylpropanes cause the resistance difference between ‘Sorbonne’ and ‘Tresor’, and could be the potential marker metabolites for gray mold resistance in the lily. Further transcriptional regulatory network analysis suggested that members of the AP2/ERF, WRKY, Trihelix, and MADS-M-type families positively regulated the biosynthesis of resistance-related phenylpropanes. Additionally, the expression patterns of genes involved in phenylpropanoid biosynthesis were confirmed using qRT-PCR. Therefore, we speculate that the degree of gray mold resistance in the lily is closely related to the contents of phenylpropanes and the transcript levels of the genes in the phenylpropanoid biosynthesis pathway. Our results not only improve our understanding of the lily’s resistance mechanisms against B. elliptica, but also facilitate the genetic improvement of lily cultivars with gray mold resistance.