Rui Cheng

Dr. Rui Cheng

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 May 2019 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
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TMTroy S. Magney
Troy S. Magney
DBDavid R. Bowling
David R. Bowling
BLBarry A. Logan
Barry A. Logan
KGKatja Grossmann
Katja Grossmann
JSJochen Stutz
Jochen Stutz
CFChristian Frankenberg
Christian Frankenberg
Northern hemisphere evergreen forests assimilate a significant fraction of global atmospheric CO 2 but monitoring large-scale changes in gross primary production (GPP) in these systems is challenging. Recent advances in remote sensing allow the detection of solar-induced chlorophyll fluorescence (SIF) emission from vegetation, which has been empirically linked to GPP at large spatial scales. This is particularly important in evergreen forests, where traditional remote-sensing techniques and terrestrial biosphere models fail to reproduce the seasonality of GPP. Here, we examined the mechanistic relationship between SIF retrieved from a canopy spectrometer system and GPP at a winter-dormant conifer forest, which has little seasonal variation in canopy structure, needle chlorophyll content, and absorbed light. Both SIF and GPP track each other in a consistent, dynamic fashion in response to environmental conditions. SIF and GPP are well correlated ( R 2 = 0.62–0.92) with an invariant slope over hourly to weekly timescales. Large seasonal variations in SIF yield capture changes in photoprotective pigments and photosystem II operating efficiency associated with winter acclimation, highlighting its unique ability to precisely track the seasonality of photosynthesis. Our results underscore the potential of new satellite-based SIF products (TROPOMI, OCO-2) as proxies for the timing and magnitude of GPP in evergreen forests at an unprecedented spatiotemporal resolution.

29 October 2020 in New Phytologist
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Journal Article
Open access
PDF file
NNNA NA
NA NA
DBDavid R. Bowling
David R. Bowling
RCRui Cheng
Rui Cheng
BLBarry A. Logan
Barry A. Logan
TMTroy S. Magney
Troy S. Magney
ARAndrew Richardson
Andrew Richardson
Summary: Evergreen conifer forests are the most prevalent land cover type in North America. Seasonal changes in the color of evergreen forest canopies have been documented with near‐surface remote sensing, but the physiological mechanisms underlying these changes, and the implications for photosynthetic uptake, have not been fully elucidated. Here, we integrate on‐the‐ground phenological observations, leaf‐level physiological measurements, near surface hyperspectral remote sensing and digital camera imagery, tower‐based CO2 flux measurements, and a predictive model to simulate seasonal canopy color dynamics. We show that seasonal changes in canopy color occur independently of new leaf production, but track changes in chlorophyll fluorescence, the photochemical reflectance index, and leaf pigmentation. We demonstrate that at winter‐dormant sites, seasonal changes in canopy color can be used to predict the onset of canopy‐level photosynthesis in spring, and its cessation in autumn. Finally, we parameterize a simple temperature‐based model to predict the seasonal cycle of canopy greenness, and we show that the model successfully simulates interannual variation in the timing of changes in canopy color. These results provide mechanistic insight into the factors driving seasonal changes in evergreen canopy color and provide opportunities to monitor and model seasonal variation in photosynthetic activity using color‐based vegetation indices.

13 May 2025 in Water Resources Research
Verified
Journal Article
Open access
JHJingyi Huang
Jingyi Huang
VSVinit Sehgal
Vinit Sehgal
LALaura V Alvarez
Laura V Alvarez
Luca BroccaLuca Brocca
Luca Brocca
SCShuohao Cai
Shuohao Cai
Joshua FisherJoshua Fisher
Joshua Fisher
This paper reviews the current state of high‐resolution remotely sensed soil moisture (SM) and evapotranspiration (ET) products and modeling, and the coupling relationship between SM and ET. SM downscaling approaches for satellite passive microwave products leverage advances in artificial intelligence and high‐resolution remote sensing using visible, near‐infrared, thermal‐infrared, and synthetic aperture radar sensors. Remotely sensed ET continues to advance in spatiotemporal resolutions from MODIS to ECOSTRESS to Hydrosat and beyond. These advances enable a new understanding of bio‐geo‐physical controls and coupled feedback mechanisms between SM and ET reflecting the land cover and land use at field scale (3–30 m, daily). Still, the state‐of‐the‐science products have their challenges and limitations, which we detail across data, retrieval algorithms, and applications. We describe the roles of these data in advancing 10 application areas: drought assessment, food security, precision agriculture, soil salinization, wildfire modeling, dust monitoring, flood forecasting, urban water, energy, and ecosystem management, ecohydrology, and biodiversity conservation. We discuss that future scientific advancement should focus on developing open‐access, high‐resolution (3–30 m), sub‐daily SM and ET products, enabling the evaluation of hydrological processes at finer scales and revolutionizing the societal applications in data‐limited regions of the world, especially the Global South for socio‐economic development.

5 January 2024 in BioScience
Verified
Journal Article
Closed access
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ZPZoe Amie Pierrat
Zoe Amie Pierrat
TMTroy S Magney
Troy S Magney
RCRui Cheng
Rui Cheng
AMAndrew Maguire
Andrew Maguire
CWChristopher Wong
Christopher Wong
DBDavid R Bowling
David R Bowling
Evergreen needleleaf forests (ENFs) play a sizable role in the global carbon cycle, but the biological and physical controls on ENF carbon cycle feedback loops are poorly understood and difficult to measure. To address this challenge, a growing appreciation for the stress physiology of photosynthesis has inspired emerging techniques designed to detect ENF photosynthetic activity with optical signals. This Overview summarizes how fundamental plant biological and biophysical processes control the fate of photons from leaf to globe, ultimately enabling remote estimates of ENF photosynthesis. We demonstrate this using data across four ENF sites spanning a broad range of environmental conditions and link leaf- and stand-scale observations of photosynthesis (i.e., needle biochemistry and flux towers) with tower- and satellite-based remote sensing. The multidisciplinary nature of this work can serve as a model for the coordination and integration of observations made at multiple scales.

15 September 2020 in Biogeosciences
Verified
Journal Article
Open access
PDF file
RCRui Cheng
Rui Cheng
TMTroy S. Magney
Troy S. Magney
DDDebsunder Dutta
Debsunder Dutta
DBDavid R. Bowling
David R. Bowling
BLBarry A. Logan
Barry A. Logan
CFChristian Frankenberg
Christian Frankenberg
Photosynthesis by terrestrial plants represents the majority of CO2 uptake on Earth, yet it is difficult to measure directly from space. Estimation of gross primary production (GPP) from remote sensing indices represents a primary source of uncertainty, in particular for observing seasonal variations in evergreen forests. Recent vegetation remote sensing techniques have highlighted spectral regions sensitive to dynamic changes in leaf/needle carotenoid composition, showing promise for tracking seasonal changes in photosynthesis of evergreen forests. However, these have mostly been investigated with intermittent field campaigns or with narrow-band spectrometers in these ecosystems. To investigate this potential, we continuously measured vegetation reflectance (400–900 nm) using a canopy spectrometer system, PhotoSpec, mounted on top of an eddy-covariance flux tower in a subalpine evergreen forest at Niwot Ridge, Colorado, USA. We analyzed driving spectral components in the measured canopy reflectance using both statistical and process-based approaches. The decomposed spectral components co-varied with carotenoid content and GPP, supporting the interpretation of the photochemical reflectance index (PRI) and the chlorophyll/carotenoid index (CCI). Although the entire 400–900 nm range showed additional spectral changes near the red edge, it did not provide significant improvements in GPP predictions. We found little seasonal variation in both normalized difference vegetation index (NDVI) and the near-infrared vegetation index (NIRv) in this ecosystem. In addition, we quantitatively determined needle-scale chlorophyll-to-carotenoid ratios as well as anthocyanin contents using full-spectrum inversions, both of which were tightly correlated with seasonal GPP changes. Reconstructing GPP from vegetation reflectance using partial least-squares regression (PLSR) explained approximately 87 % of the variability in observed GPP. Our results linked the seasonal variation in reflectance to the pool size of photoprotective pigments, highlighting all spectral locations within 400–900 nm associated with GPP seasonality in evergreen forests.

12 October 2022 in Biogeosciences
Verified
Journal Article
Open access
PDF file
BBBrendan Byrne
Brendan Byrne
JLJunjie Liu
Junjie Liu
YYYonghong Yi
Yonghong Yi
ACAbhishek Chatterjee
Abhishek Chatterjee
SBSourish Basu
Sourish Basu
CMCharles E. Miller
Charles E. Miller
Site-level observations have shown pervasive cold season CO2 release across Arctic and boreal ecosystems, impacting annual carbon budgets. Still, the seasonality of CO2 emissions are poorly quantified across much of the high latitudes due to the sparse coverage of site-level observations. Space-based observations provide the opportunity to fill some observational gaps for studying these high-latitude ecosystems, particularly across poorly sampled regions of Eurasia. Here, we show that data-driven net ecosystem exchange (NEE) from atmospheric CO2 observations implies strong summer uptake followed by strong autumn release of CO2 over the entire cold northeastern region of Eurasia during the 2015–2019 study period. Combining data-driven NEE with satellite-based estimates of gross primary production (GPP), we show that this seasonality implies less summer heterotrophic respiration (Rh) and greater autumn Rh than would be expected given an exponential relationship between respiration and surface temperature. Furthermore, we show that this seasonality of NEE and Rh over northeastern Eurasia is not captured by the TRENDY v8 ensemble of dynamic global vegetation models (DGVMs), which estimate that 47 %–57 % (interquartile range) of annual Rh occurs during August–April, while the data-driven estimates suggest 59 %–76 % of annual Rh occurs over this period. We explain this seasonal shift in Rh by respiration from soils at depth during the zero-curtain period, when sub-surface soils remain unfrozen up to several months after the surface has frozen. Additional impacts of physical processes related to freeze–thaw dynamics may contribute to the seasonality of Rh. This study confirms a significant and spatially extensive early cold season CO2 efflux in the permafrost-rich region of northeast Eurasia and suggests that autumn Rh from subsurface soils in the northern high latitudes is not well captured by current DGVMs.