Amos Stemmer

Mr. Amos Stemmer

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 August 2020 in PLOS ONE
Verified
Journal Article
Open access
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ASAmos Stemmer
Amos Stemmer
RSRan Shadmi
Ran Shadmi
OBOrna Bregman-Amitai
Orna Bregman-Amitai
DCDavid Chettrit
David Chettrit
DBDenitza Blagev
Denitza Blagev
EEEldad Elnekave
Eldad Elnekave
The National Lung Screening Trial (NLST) demonstrated that annual screening with low dose CT in high-risk population was associated with reduction in lung cancer mortality. Nonetheless, the leading cause of mortality in the study was from cardiovascular diseases. To determine whether the used machine learning automatic algorithms assessing coronary calcium score (CCS), level of liver steatosis and emphysema percentage in the lungs are good predictors of cardiovascular disease (CVD) mortality and incidence when applied on low dose CT scans. Three fully automated machine learning algorithms were used to assess CCS, level of liver steatosis and emphysema percentage in the lung. The algorithms were used on low-dose computed tomography scans acquired from 12,332 participants in NLST. In a multivariate analysis, association between the three algorithm scores and CVD mortality have shown an OR of 1.72 (p = 0.003), 2.62 (p < 0.0001) for CCS scores of 101–400 and above 400 respectively, and an OR of 1.12 (p = 0.044) for level of liver steatosis. Similar results were shown for the incidence of CVD, OR of 1.96 (p < 0.0001), 4.94 (p < 0.0001) for CCS scores of 101–400 and above 400 respectively. Also, emphysema percentage demonstrated an OR of 0.89 (p < 0.0001). Similar results are shown for univariate analyses of the algorithms. The three automated machine learning algorithms could help physicians to assess the incidence and risk of CVD mortality in this specific population. Application of these algorithms to existing LDCT scans can provide valuable health care information and assist in future research.

21 July 2022 in JAMA Network Open
Verified
Journal Article
Open access
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NENoa Eliakim-Raz
Noa Eliakim-Raz
ASAmos Stemmer
Amos Stemmer
NGNassem Ghantous
Nassem Ghantous
ANAsaf Ness
Asaf Ness
MAMuhammad Awwad
Muhammad Awwad
SSSalomon M Stemmer
Salomon M Stemmer
At the beginning of the fifth SARS-CoV-2 wave in Israel, with the B.1.1.529 (Omicron) variant, the effectiveness of the third SARS-CoV-2 BNT162b2 vaccine (Pfizer-BioNTech) against Omicron was questioned. During the fifth wave, in January 2022, the Israeli Ministry of Health authorized a fourth BNT162b2 dose for individuals aged 60 years or older (a third dose was authorized for such individuals in July 2021, during the fourth SARS-CoV-2 wave).

14 October 2022 in Cancers
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Journal Article
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EEEldad Elnekave
Eldad Elnekave
EAEytan Ben Ami
Eytan Ben Ami
SSSivan Shamai
Sivan Shamai
IPIdit Peretz
Idit Peretz
STShlomit Tamir
Shlomit Tamir
SAShifra Ash
Shifra Ash
Desmoid fibromatoses (DFs) are locally aggressive tumors composed of monoclonal fibroblasts within an abundant extracellular matrix. Systemic doxorubicin treatment is effective, but toxic. We investigated arterial doxorubicin eluting embolization (DEE), an approach characterized by high drug concentrations in the tumor alongside limited systemic drug exposure. The primary and secondary endpoints were radiological response using MRI and RECIST 1.1, respectively. The study included 24 patients (median age, 24; interquartile range, 16–34 years). Data were collected prospectively for 9 patients and retrospectively for 15 patients. The most frequent tumor locations were chest/abdomen wall and neck/shoulder/axilla (29% each). Of 24 patients, 7 (24%) were treatment naïve, and 17 (71%) had received one or two prior treatments. Patients underwent a median of two treatments (range, 1–4), with a median of 49 mg (range, 8–75) doxorubicin/treatment. Efficacy outcomes were available for 23 patients. With a median follow-up of 8 months (interquartile range, 3–13), median tumor volumes decreased by 59% (interquartile range, 40–71%) and T2 signal intensity decreased by 36% (interquartile range, 19–55%). Of 23 patients, 9 (39%), 12 (52%), and 2 (9%) had a partial response, stable disease, and progressive disease, respectively. DEE was safe and well tolerated, with one reported grade 3–4 adverse event (cord injury). In conclusion, DEE was safe and achieved rapid clinical/volumetric responses in DFs.

15 December 2023 in European Journal of Cancer
Verified
Journal Article
Closed access
ASAmos Stemmer
Amos Stemmer
OMOfer Margalit
Ofer Margalit
VSVictoria Serpas
Victoria Serpas
GSGal Strauss
Gal Strauss
JTJane Thomas
Jane Thomas
BBBen Boursi
Ben Boursi

18 October 2020 in Cancers
Verified
Journal Article
Open access
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ASAmos Stemmer
Amos Stemmer
ISInbal Shafran
Inbal Shafran
SSSalomon M Stemmer
Salomon M Stemmer
DTDaliah Tsoref
Daliah Tsoref
Background: Three PARPis (olaparib, niraparib and rucaparib) are currently FDA-approved as maintenance therapy in newly diagnosed and recurrent ovarian cancer. However, thus far, no trial has compared the three approved PARPis in the overall population, in patients with BRCA mutations, or in those with wild-type BRCA. Methods: A frequentist network meta-analysis was used for indirect comparisons between the different PARPis with respect to progression free survival (PFS), overall survival (OS), and adverse events. Results: Overall, six randomized clinical trials involving 2,770 patients, were included in the analysis. Results from the indirect comparisons revealed no statistically significant differences between the three PARPis with respect to PFS or OS in the entire population and in patients with mutated and wild-type BRCA, separately. Niraparib showed a statistically significant increased risk for grade 3 and 4 thrombocytopenia (risk-difference [RD] from placebo: 0.3; 95% confidence interval [CI], 0.27‒0.34) and any grade neutropenia (RD from placebo: 0.22; 95% CI, 0.18‒0.25) as compared with the other PARPis. Conclusion: No statistically significant difference was found between the three PARPis with respect to PFS or OS (overall and in subpopulations by BRCA status). There is, however, a statistical difference in toxicity as niraparib is associated with a greater risk for thrombocytopenia and neutropenia.

18 October 2024 in bioRxiv
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ESEldad David Shulman
Eldad David Shulman
ECEmma M. Campagnolo
Emma M. Campagnolo
RLRoshan Lodha
Roshan Lodha
ASAmos Stemmer
Amos Stemmer
TCThomas Cantore
Thomas Cantore
EREytan Ruppin
Eytan Ruppin
Spatial transcriptomics (ST) is transforming our understanding of tumor heterogeneity by enabling high-resolution, location-specific mapping of gene expression across tumors and their microenvironment. However, the associated high cost of the assay has limited cohort size and hence large-scale biomarker discovery. Here we present Path2Space , a deep learning approach that predicts spatial gene expression directly from histopathology slides. Trained on substantial breast cancer ST data, it robustly predicts the spatial expression of over 4,300 genes in independent validations, markedly outperforming existing ST predictors. Path2Space additionally accurately infers cell-type abundances in the tumor microenvironment (TME) based on the inferred ST data. Applied to more than a thousand breast tumor histopathology slides from the TCGA, Path2Space characterizes their TME on an unprecedented scale and identifies three new spatially-grounded breast cancer subgroups with distinct survival rates. Path2Space -inferred TME landscapes enable more accurate predictions of patients’ response to chemotherapy and trastuzumab directly from H&E slides than those obtained by existing established sequencing-based biomarkers. Path2Space thus offers a transformative, fast and cost-effective approach to robustly delineate the TME directly from their histopathology slides, facilitating the development of spatially-grounded biomarkers to advance precision oncology.