Hongxing Lei

Dr. Hongxing Lei

CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China
orcid

Research Focus & Metrics

Academic Career Length

34Years (1993-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2017 in Genomics, Proteomics & Bioinformatics
Verified
Journal Article
Open access
YWYanqing Wang
Yanqing Wang
FSFuhai Song
Fuhai Song
JZJunwei Zhu
Junwei Zhu
SZSisi Zhang
Sisi Zhang
YYYadong Yang
Yadong Yang
WZWenming Zhao
Wenming Zhao
With the rapid development of sequencing technologies towards higher throughput and lower cost, sequence data are generated at an unprecedentedly explosive rate. To provide an efficient and easy-to-use platform for managing huge sequence data, here we present Genome Sequence Archive (GSA; http://bigd.big.ac.cn/gsa or http://gsa.big.ac.cn), a data repository for archiving raw sequence data. In compliance with data standards and structures of the International Nucleotide Sequence Database Collaboration (INSDC), GSA adopts four data objects (BioProject, BioSample, Experiment, and Run) for data organization, accepts raw sequence reads produced by a variety of sequencing platforms, stores both sequence reads and metadata submitted from all over the world, and makes all these data publicly available to worldwide scientific communities. In the era of big data, GSA is not only an important complement to existing INSDC members by alleviating the increasing burdens of handling sequence data deluge, but also takes the significant responsibility for global big data archive and provides free unrestricted access to all publicly available data in support of research activities throughout the world.

20 March 2007 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
HLHongxing Lei
Hongxing Lei
CWChun Wu
Chun Wu
HLHaiguang Liu
Haiguang Liu
YDYong Duan
Yong Duan
High-accuracy ab initio folding has remained an elusive objective despite decades of effort. To explore the folding landscape of villin headpiece subdomain HP35, we conducted two sets of replica exchange molecular dynamics for 200 ns each and three sets of conventional microsecond-long molecular dynamics simulations, using AMBER FF03 force field and a generalized-Born solvation model. The protein folded consistently to the native state; the lowest C α -rmsd from the x-ray structure was 0.46 Å, and the C α - rmsd of the center of the most populated cluster was 1.78 Å at 300 K. ab initio simulations have previously not reached this level. The folding landscape of HP35 can be partitioned into the native, denatured, and two intermediate-state regions. The native state is separated from the major folding intermediate state by a small barrier, whereas a large barrier exists between the major folding intermediate and the denatured states. The melting temperature T m = 339 K extracted from the heat-capacity profile was in close agreement with the experimentally derived T m = 342 K. A comprehensive picture of the kinetics and thermodynamics of HP35 folding emerges when the results from replica exchange and conventional molecular dynamics simulations are combined.

8 March 2006 in Journal of Computational Chemistry
Verified
Journal Article
Closed access
PDF file
ZWZhi‐Xiang Wang
Zhi‐Xiang Wang
WZWei Zhang
Wei Zhang
CWChun Wu
Chun Wu
HLHongxing Lei
Hongxing Lei
PCPiotr Cieplak
Piotr Cieplak
YDYong Duan
Yong Duan

11 January 2007 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
CWChun Wu
Chun Wu
ZWZhixiang Wang
Zhixiang Wang
HLHongxing Lei
Hongxing Lei
WZWei Zhang
Wei Zhang
YDYong Duan
Yong Duan

10 March 2011 in The Journal of Physical Chemistry B
Verified
Journal Article
Closed access
Junmei WangJunmei Wang
Junmei Wang
PCPiotr Cieplak
Piotr Cieplak
JLJie Li
Jie Li
JWJun Wang
Jun Wang
QCQin Cai
Qin Cai
YDYong Duan
Yong Duan

1 December 2008 in Journal of Molecular Biology
Verified
Journal Article
Closed access
CWChun Wu
Chun Wu
ZWZhixiang Wang
Zhixiang Wang
HLHongxing Lei
Hongxing Lei
YDYong Duan
Yong Duan
MBMichael T. Bowers
Michael T. Bowers
JSJoan-Emma Shea
Joan-Emma Shea