Chun Wu

Dr. Chun Wu

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 September 2003 in Journal of Computational Chemistry
Verified
Journal Article
Closed access
PDF file
YDYong Duan
Yong Duan
CWChun Wu
Chun Wu
SCShibasish Chowdhury
Shibasish Chowdhury
MLMathew C. Lee
Mathew C. Lee
GXGuoming Xiong
Guoming Xiong
PKPeter Kollman
Peter Kollman

20 March 2007 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
HLHongxing Lei
Hongxing Lei
CWChun Wu
Chun Wu
HLHaiguang Liu
Haiguang Liu
YDYong Duan
Yong Duan
High-accuracy ab initio folding has remained an elusive objective despite decades of effort. To explore the folding landscape of villin headpiece subdomain HP35, we conducted two sets of replica exchange molecular dynamics for 200 ns each and three sets of conventional microsecond-long molecular dynamics simulations, using AMBER FF03 force field and a generalized-Born solvation model. The protein folded consistently to the native state; the lowest C α -rmsd from the x-ray structure was 0.46 Å, and the C α - rmsd of the center of the most populated cluster was 1.78 Å at 300 K. ab initio simulations have previously not reached this level. The folding landscape of HP35 can be partitioned into the native, denatured, and two intermediate-state regions. The native state is separated from the major folding intermediate state by a small barrier, whereas a large barrier exists between the major folding intermediate and the denatured states. The melting temperature T m = 339 K extracted from the heat-capacity profile was in close agreement with the experimentally derived T m = 342 K. A comprehensive picture of the kinetics and thermodynamics of HP35 folding emerges when the results from replica exchange and conventional molecular dynamics simulations are combined.

25 April 2011 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
NDNicholas F. Dupuis
Nicholas F. Dupuis
CWChun Wu
Chun Wu
JSJoan-Emma Shea
Joan-Emma Shea
MBMichael T. Bowers
Michael T. Bowers

1 December 2009 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
NDNicholas F. Dupuis
Nicholas F. Dupuis
CWChun Wu
Chun Wu
JSJoan-Emma Shea
Joan-Emma Shea
MBMichael T. Bowers
Michael T. Bowers

1 April 2011 in Current Opinion in Structural Biology
Verified
Journal Article
Closed access
CWChun Wu
Chun Wu
JSJoan-Emma Shea
Joan-Emma Shea

8 March 2006 in Journal of Computational Chemistry
Verified
Journal Article
Closed access
PDF file
ZWZhi‐Xiang Wang
Zhi‐Xiang Wang
WZWei Zhang
Wei Zhang
CWChun Wu
Chun Wu
HLHongxing Lei
Hongxing Lei
PCPiotr Cieplak
Piotr Cieplak
YDYong Duan
Yong Duan