Felipe Yamashita

Mr. Felipe Yamashita

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 September 2021 in Plant Signaling & Behavior
Verified
Journal Article
Open access
JWJacob White
Jacob White
FYFelipe Yamashita
Felipe Yamashita
Upon discovery that the Boquila trifoliolata is capable of flexible leaf mimicry, the question of the mechanism behind this ability has been unanswered. Here, we demonstrate that plant vision possibly via plant-specific ocelli is a plausible hypothesis. A simple experiment by placing an artificial vine model above the living plants has shown that these will attempt to mimic the artificial leaves. The experiment has been carried out with multiple plants, and each plant has shown attempts at mimicry. It was observed that mimic leaves showed altered leaf areas, perimeters, lengths, and widths compared to non-mimic leaves. We have calculated four morphometrical features and observed that mimic leaves showed higher aspect ratio and lower rectangularity and form factor compared to non-mimic leaves. In addition, we have observed differences in the leaf venation patterns, with the mimic leaves having less dense vascular networks, thinner vascular strands, and lower numbers of free-ending veinlets.

4 March 2021 in Plants
Verified
Journal Article
Open access
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FYFelipe Yamashita
Felipe Yamashita
ARAngélica Rodrigues
Angélica Rodrigues
TRTatiane Maria Rodrigues
Tatiane Maria Rodrigues
FPFernanda Helena Palermo
Fernanda Helena Palermo
FBFrantišek Baluška
František Baluška
LALuiz Fernando Rolim De Almeida
Luiz Fernando Rolim De Almeida
Despite the fact that they are sessile organisms, plants actively move their organs and also use these movements to manipulate the surrounding biotic and abiotic environments. Plants maintain communication with neighboring plants, herbivores, and predators through the emission of diverse chemical compounds by their shoots and roots. These infochemicals modify the environment occupied by plants. Moreover, some infochemicals may induce morphophysiological changes of neighboring plants. We have used methyl-jasmonate (MeJa), a plant natural infochemical, to trigger communication between emitters and receivers Sorghum bicolor plants. The split roots of two plants were allocated to three different pots, with the middle pot containing the roots of both plants. We scored low stomatal conductance (gS) and low CO2 net assimilation (A) using the plants that had contact with the infochemical for the first time. During the second contact, these parameters showed no significant differences, indicating a memory effect. We also observed that the plants that had direct leaf contact with MeJa transmitted sensory information through their roots to neighboring plants. This resulted in higher maximum fluorescence (FM) and structural changes in root anatomy. In conclusion, MeJa emerges as possible trigger for communication between neighboring sorghum plants, in response to the environmental challenges.

22 December 2022 in Plants
Verified
Journal Article
Open access
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FYFelipe Yamashita
Felipe Yamashita
FBFrantišek Baluška
František Baluška
Vision is essential for most organisms, and it is highly variable across kingdoms and domains of life. The most known and understood form is animal and human vision based on eyes. Besides the wide diversity of animal eyes, some animals such as cuttlefish and cephalopods enjoy so-called dermal or skin vision. The most simple and ancient organ of vision is the cell itself and this rudimentary vision evolved in cyanobacteria. More complex are so-called ocelloids of dinoflagellates which are composed of endocellular organelles, acting as lens- and cornea/retina-like components. Although plants have almost never been included into the recent discussions on organismal vision, their plant-specific ocelli had already been proposed by Gottlieb Haberlandt already in 1905. Here, we discuss plant ocelli and their roles in plant-specific vision, both in the shoots and roots of plants. In contrast to leaf epidermis ocelli, which are distributed throughout leaf surface, the root apex ocelli are located at the root apex transition zone and serve the light-guided root navigation. We propose that the plant ocelli evolved from the algal ocelloids, are part of complex plant sensory systems and guide cognition-based plant behavior.

3 August 2023 in Preprints.org
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Preprint
Open access
PDF file
NINjimona IBRAHIM
Njimona IBRAHIM
FYFelipe Yamashita
Felipe Yamashita
FBFrantišek Baluška
František Baluška
The adaptation of plants to biotic and abiotic stress depends on their abilities to sense their surroundings and to generate and transmit corresponding signals to different parts of their body that can evoke changes necessary for optimizing growth and defense. Light has been shown to be one of the key environmental factors that modulate the physiology of both plants and animals via the diverse photoreceptors found in them. Both plants and animals contain a large repertoire of intra- and intercellular signals molecules that include organic and inorganic. One such molecule is a neurotransmitter, γ-aminobutyric acid (GABA), a non-protein amino acid, that rapidly accumulates in plant tissues in response to biotic and abiotic stress and regulates plant growth. Lots of research has been done on GABA in plants for slightly more than half a century now: Its discovery in plant tissues was immediately followed by physiological and biochemical studies. Thereafter molecular-genetics era of cloning the genes encoding the GABA shunt enzymes and transporters, and recombinant expression and purification of the enzymes in vitro to elucidate their regulatory properties and substrate specificity was established. Recently the discovery of the first bona fide GABA target proteins in plants, the ALMTs suggest that GABA indeed could be one of the signaling molecules in plants. All this research did not address in detail the relationship between light and GABA. To better understand the role of GABA in relation to light we set up six light conditions to investigate the changes in the hypocotyl and root growth in Arabidopsis thaliana under different light conditions, including total light, total dark, light blocker, gradient light, shoot dark, shoot dark with blocker. We treated the seedlings with 3-MPA, a GABA inhibitor, using different concentrations grown under different light conditions between 24 to 96 h. Our results show that both the root and hypocotyl are modulated by GABA when grown under different light conditions. These results clearly suggest a link in the signaling pathway of GABA with photoreceptor signaling pathways.

5 May 2024 in Plant Signaling & Behavior
Verified
Journal Article
Open access
XYXingyu Yan
Xingyu Yan
YLYongshun Liang
Yongshun Liang
FYFelipe Yamashita
Felipe Yamashita
FBFrantišek Baluška
František Baluška
Plants can activate protective and defense mechanisms under biotic and abiotic stresses. Their roots naturally grow in the soil, but when they encounter sunlight in the top-soil layers, they may move away from the light source to seek darkness. Here we investigate the skototropic behavior of roots, which promotes their fitness and survival. Glutamate-like receptors (GLRs) of plants play roles in sensing and responding to signals, but their role in root skototropism is not yet understood. Light-induced tropisms are known to be affected by auxin distribution, mainly determined by auxin efflux proteins (PIN proteins) at the root tip. However, the role of PIN proteins in root skototropism has not been investigated yet. To better understand root skototropism and its connection to the distance between roots and light, we established five distance settings between seedlings and darkness to investigate the variations in root bending tendencies. We compared differences in root skototropic behavior across different expression lines of Arabidopsis thaliana seedlings (atglr3.7 ko, AtGLR3.7 OE, and pin2 knockout) to comprehend their functions. Our research shows that as the distance between roots and darkness increases, the root's positive skototropism noticeably weakens. Our findings highlight the involvement of GLR3.7 and PIN2 in root skototropism.

20 April 2026 in SSRN Electronic Journal
Verified
Preprint
Open access
KOKonatsu Ono
Konatsu Ono
GAGabriel Aguirre-Fernández
Gabriel Aguirre-Fernández
MLMatthias Lewy
Matthias Lewy
FYFelipe Yamashita
Felipe Yamashita
BLBalbina Lambos
Balbina Lambos
MSMarcelo R. Sánchez-Villagra
Marcelo R. Sánchez-Villagra
Communication serves as a pivotal means for mutual understanding beyond species boundaries. Definitions of interspecific communication, and communication between humans and other-than-human organisms in particular, are not only dependent on different perspectives across research disciplines – also different cultures and societies vary in their understanding of communication driven by distinct conceptualizations of the world and the organisms around them. We conducted a cross-cultural survey based on the Human Relation Area Files, an anthropological fieldnotes database, which demonstrates the ubiquity of an assumed understanding of human-animal communication around the world. Western and Indigenous epistemologies are seen as clashing but both have common human universals of rationality that are based on observations and interactions with the environment. Biological research has demonstrated that soniferous behavior (i.e. sound production) across vertebrates is widespread, the basis of acoustic communication, and other research points towards widespread existence of interspecies communication. We highlight the powerful synergy that can be forged between Indigenous knowledge and Western science and highlight a timely topic on connection beyond species boundaries.