Elena Ryabchikova

Prof. Elena Ryabchikova

Institute of Chemicak Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sience
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orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 August 2011 in Viruses
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JOJudith Olejnik
Judith Olejnik
ERElena Ryabchikova
Elena Ryabchikova
RCRonald B. Corley
Ronald B. Corley
Elke MühlbergerElke Mühlberger
Elke Mühlberger
Marburg and Ebola viruses cause a severe hemorrhagic disease in humans with high fatality rates. Early target cells of filoviruses are monocytes, macrophages, and dendritic cells. The infection spreads to the liver, spleen and later other organs by blood and lymph flow. A hallmark of filovirus infection is the depletion of non-infected lymphocytes; however, the molecular mechanisms leading to the observed bystander lymphocyte apoptosis are poorly understood. Also, there is limited knowledge about the fate of infected cells in filovirus disease. In this review we will explore what is known about the intracellular events leading to virus amplification and cell damage in filovirus infection. Furthermore, we will discuss how cellular dysfunction and cell death may correlate with disease pathogenesis.

18 May 2013 in BioMetals
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AGAlina Grigor'eva
Alina Grigor'eva
ISIrina Saranina
Irina Saranina
NTNina Tikunova
Nina Tikunova
ASAlexey Safonov
Alexey Safonov
NTNikolai Timoshenko
Nikolai Timoshenko
ERElena Ryabchikova
Elena Ryabchikova

1 January 2017 in BioMed Research International
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ASAnna V. Savelyeva
Anna V. Savelyeva
EKElena Kuligina
Elena Kuligina
DBDmitry N. Bariakin
Dmitry N. Bariakin
VKVadim V. Kozlov
Vadim V. Kozlov
ERElena Ryabchikova
Elena Ryabchikova
DSDmitry V. Semenov
Dmitry V. Semenov
Human peripheral blood contains RNA in cells and in extracellular membrane vesicles, microvesicles and exosomes, as well as in cell-free ribonucleoproteins. Circulating mRNAs and noncoding RNAs, being internalized, possess the ability to modulate vital processes in recipient cells. In this study, with SOLiD sequencing technology, we performed identification, classification, and quantification of RNAs from blood fractions: cells, plasma, plasma vesicles pelleted at 16,000gand 160,000g, and vesicle-depleted plasma supernatant of healthy donors and non-small cell lung cancer (NSCLC) patients. It was determined that 16,000gblood plasma vesicles were enriched with cell-free mitochondria and with a set of mitochondrial RNAs. The variable RNA set of blood plasma 160,000gpellets reflected the prominent contribution of U1, U5, and U6 small nuclear RNAs’ fragments and at the same time was characterized by a remarkable depletion of small nucleolar RNAs. Besides microRNAs, the variety of fragments of mRNAs and snoRNAs dominated in the set of circulating RNAs differentially expressed in blood fractions of NSCLC patients. Taken together, our data emphasize that not only extracellular microRNAs but also circulating fragments of messenger and small nuclear/nucleolar RNAs represent prominent classes of circulating regulatory ncRNAs as well as promising circulating biomarkers for the development of disease diagnostic approaches.

1 April 2016 in Biochemistry (Moscow), Supplement Series B: Biomedical Chemistry
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AGAlina Grigor'eva
Alina Grigor'eva
STSvetlana Tamkovich
Svetlana Tamkovich
AEA. V. Eremina
A. V. Eremina
ATA. E. Tupikin
A. E. Tupikin
Marsel R. KabilovMarsel R. Kabilov
Marsel R. Kabilov
ERElena Ryabchikova
Elena Ryabchikova
Exosomes represent a sort of extracellular vesicles, which transfer molecular signals in the body and contain markers of the exosome-producing cell. This study was aimed at search of exosomes in the...

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EBEvgeniya Burkova
Evgeniya Burkova
AGAlina Grigor'eva
Alina Grigor'eva
DBDmitriy Bulgakov
Dmitriy Bulgakov
Pavel DmitrenokPavel Dmitrenok
Pavel Dmitrenok
VVValentin Vlassov
Valentin Vlassov
GNGeorgy Nevinsky
Georgy Nevinsky
Exosomes are nanovesicles (30–100 nm) containing various RNAs and different proteins. Exosomes are important in intracellular communication, immune function, etc. Exosomes from different sources including placenta were mainly obtained by different types of centrifugation and ultracentrifugations and were reported to contain from a few dozen to thousands of different proteins. First crude exosome preparations from four placentas (normal pregnancy) were obtained here using several standard centrifugations but then were additionally purified by gel filtration on Sepharose 4B. Individual preparations demonstrated different gel filtration profiles showing good or bad separation of exosome peaks from two peaks of impurity proteins and their complexes. According to electron microscopy, exosomes before gel filtration contain vesicles of different size, ring-shaped structures forming by ferritin and clusters of aggregated proteins and their complexes. After filtration through 220 nm filters and gel filtration exosomes display typically for exosome morphology and size (30–100 nm) and do not contain visible protein admixtures. Identification of exosome proteins was carried out by MS and MS/MS MALDI mass spectrometry of proteins’ tryptic hydrolyzates after their SDS-PAGE and 2D electrophoresis. We have obtained unexpected results. Good, purified exosomes contained only 11–13 different proteins: CD9, CD81, CD-63, hemoglobin subunits, interleukin-1 receptor, annexin A1, annexin A2, annexin A5, cytoplasmic actin, alkaline phosphatase, serotransferin, and probably human serum albumin and immunoglobulins. We assume that a possible number of exosome proteins found previously using crude preparations may be very much overestimated. Our data may be important for study of biological functions of pure exosomes.

14 December 2020 in Microorganisms
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AGAlina Grigor'eva
Alina Grigor'eva
ABAlevtina Bardasheva
Alevtina Bardasheva
ATAnastasiya Tupitsyna
Anastasiya Tupitsyna
NANariman V. Amirkhanov
Nariman V. Amirkhanov
NTNina V. Tikunova
Nina V. Tikunova
ERElena Ryabchikova
Elena Ryabchikova
Antimicrobial peptides, including synthetic ones, are becoming increasingly important as a promising tool to fight multidrug-resistant bacteria. We examined the effect of cationic peptides H2N-Arg9-Phe2-C(O)NH2 and H2N-(Lys-Phe-Phe)3-Lys-C(O)NH2 on Staphylococcus aureus, which remains one of the most harmful pathogens. Antiseptic chlorhexidine served as reference preparation. We studied viability of S. aureus and examined its ultrastructure under treatment with 100 µM of R9F2 or (KFF)3K peptides or chlorhexidine using transmission electron microscopy of ultrathin sections. Bacterial cells were sampled as kinetic series starting from 1 min up to 4 h of treatment with preparations. Both peptides caused clearly visible damage of bacteria cell membrane within 1 min. Incubation of S. aureus with R9F2 or (KFF)3K peptides led to cell wall thinning, loss of cytoplasm structure, formation of mesosome-derived multimembrane structures and “decorated fibers” derived from DNA chains. The effect of R9F2 peptides on S. aureus was more severe than the effect of (KFF)3K peptides. Chlorhexidine heavily damaged the bacteria cell wall, in particular in areas of septa formation, while cytoplasm kept its structure within the observation time. Our study showed that cell membrane damage is critical for S. aureus viability; however, we believe that cell wall disorders should also be taken into account when analyzing the effects of the mechanisms of action of antimicrobial peptides (AMPs).