A route to reducing the wear of the metal counterpart in the friction of meatal against diamond-like carbon (DLC) is to form a lubricating tribofilm on the metal counterface. However, in liquid lubricating conditions, the formation of tribofilm can be influenced by both the lubricating medium and the counterpart material. Here we report the effect of lubricating biomolecule and doping fluorine element on the formation of tribofilm in fluorinated DLC (FDLC)-Ti6Al4V friction system. A group of ball-on-disc frictional experiments with different sliding speeds and normal loads were performed in phosphate buffer solution (PBS) and bovine serum albumin (BSA) solution. The results showed the formation of tribofilm was inhibited by the absorption of biomolecules on the frictional surface, thus improving the friction coefficient and wear of Ti6Al4V counterpart. Doping fluorine into DLC film also can restrain the formation of tribofilm on Ti6Al4V counterface. As a result, tribofilm is difficult to form when Ti6Al4V counterface slides against FDLC in BSA solution. Fluorinated DLC film should be considered carefully for the anti-wear use in body fluid containing biomolecules because it might cause severe wear of the counterpart material.