David E. Thompson

Dr. David E. Thompson

Department of Electrical and Computer Engineering, Kansas State University, Manhattan, KS 66506, USA
orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 March 2011 in Journal of Neural Engineering
Verified
Journal Article
Closed access
JMJ N Mak
J N Mak
YAY Arbel
Y Arbel
JMJ W Minett
J W Minett
LML M McCane
L M McCane
BYB Yuksel
B Yuksel
DED Erdogmus
D Erdogmus
This paper summarizes the presentations and discussions at a workshop held during the Fourth International BCI Meeting charged with reviewing and evaluating the current state, limitations and future development of P300-based brain-computer interface (P300-BCI) systems. We reviewed such issues as potential users, recording methods, stimulus presentation paradigms, feature extraction and classification algorithms, and applications. A summary of the discussions and the panel's recommendations for each of these aspects are presented.

11 December 2014 in Journal of Neural Engineering
Verified
Journal Article
Closed access
BCBreanne P Christie
Breanne P Christie
DTDerek M Tat
Derek M Tat
ZIZachary T Irwin
Zachary T Irwin
VGVikash Gilja
Vikash Gilja
PNPaul Nuyujukian
Paul Nuyujukian
CCCynthia A Chestek
Cynthia A Chestek
For intracortical brain-machine interfaces (BMIs), action potential voltage waveforms are often sorted to separate out individual neurons. If these neurons contain independent tuning information, this process could increase BMI performance. However, the sorting of action potentials ('spikes') requires high sampling rates and is computationally expensive. To explicitly define the difference between spike sorting and alternative methods, we quantified BMI decoder performance when using threshold-crossing events versus sorted action potentials. We used data sets from 58 experimental sessions from two rhesus macaques implanted with Utah arrays. Data were recorded while the animals performed a center-out reaching task with seven different angles. For spike sorting, neural signals were sorted into individual units by using a mixture of Gaussians to cluster the first four principal components of the waveforms. For thresholding events, spikes that simply crossed a set threshold were retained. We decoded the data offline using both a Naïve Bayes classifier for reaching direction and a linear regression to evaluate hand position. We found the highest performance for thresholding when placing a threshold between -3 and -4.5 × Vrms. Spike sorted data outperformed thresholded data for one animal but not the other. The mean Naïve Bayes classification accuracy for sorted data was 88.5% and changed by 5% on average when data were thresholded. The mean correlation coefficient for sorted data was 0.92, and changed by 0.015 on average when thresholded. For prosthetics applications, these results imply that when thresholding is used instead of spike sorting, only a small amount of performance may be lost. The utilization of threshold-crossing events may significantly extend the lifetime of a device because these events are often still detectable once single neurons are no longer isolated.

19 May 2014 in Journal of Neural Engineering
Verified
Journal Article
Closed access
David E. ThompsonDavid E. Thompson
David E. Thompson
LQLucia R Quitadamo
Lucia R Quitadamo
LMLuca Mainardi
Luca Mainardi
KLKhalil Ur Rehman Laghari
Khalil Ur Rehman Laghari
SGShangkai Gao
Shangkai Gao
JHJane E. Huggins
Jane E. Huggins
Brain-computer interfaces (BCIs) have the potential to be valuable clinical tools. However, the varied nature of BCIs, combined with the large number of laboratories participating in BCI research, makes uniform performance reporting difficult. To address this situation, we present a tutorial on performance measurement in BCI research. A workshop on this topic was held at the 2013 International BCI Meeting at Asilomar Conference Center in Pacific Grove, California. This paper contains the consensus opinion of the workshop members, refined through discussion in the following months and the input of authors who were unable to attend the workshop. Checklists for methods reporting were developed for both discrete and continuous BCIs. Relevant metrics are reviewed for different types of BCI research, with notes on their use to encourage uniform application between laboratories. Graduate students and other researchers new to BCI research may find this tutorial a helpful introduction to performance measurement in the field.

29 December 2020 in Sensors
Verified
Journal Article
Open access
PDF file
Charles CarlsonCharles Carlson
Charles Carlson
VTVanessa-Rose Turpin
Vanessa-Rose Turpin
Ahmad SulimanAhmad Suliman
Ahmad Suliman
CACarl Ade
Carl Ade
Steve WarrenSteve Warren
Steve Warren
David E. ThompsonDavid E. Thompson
David E. Thompson
Background: The goal of this work was to create a sharable dataset of heart-driven signals, including ballistocardiograms (BCGs) and time-aligned electrocardiograms (ECGs), photoplethysmograms (PPGs), and blood pressure waveforms. Methods: A custom, bed-based ballistocardiographic system is described in detail. Affiliated cardiopulmonary signals are acquired using a GE Datex CardioCap 5 patient monitor (which collects ECG and PPG data) and a Finapres Medical Systems Finometer PRO (which provides continuous reconstructed brachial artery pressure waveforms and derived cardiovascular parameters). Results: Data were collected from 40 participants, 4 of whom had been or were currently diagnosed with a heart condition at the time they enrolled in the study. An investigation revealed that features extracted from a BCG could be used to track changes in systolic blood pressure (Pearson correlation coefficient of 0.54 +/− 0.15), dP/dtmax (Pearson correlation coefficient of 0.51 +/− 0.18), and stroke volume (Pearson correlation coefficient of 0.54 +/− 0.17). Conclusion: A collection of synchronized, heart-driven signals, including BCGs, ECGs, PPGs, and blood pressure waveforms, was acquired and made publicly available. An initial study indicated that bed-based ballistocardiography can be used to track beat-to-beat changes in systolic blood pressure and stroke volume. Significance: To the best of the authors’ knowledge, no other database that includes time-aligned ECG, PPG, BCG, and continuous blood pressure data is available to the public. This dataset could be used by other researchers for algorithm testing and development in this fast-growing field of health assessment, without requiring these individuals to invest considerable time and resources into hardware development and data collection.

1 October 2009 in Journal of Neuroscience Methods
Verified
Journal Article
Closed access
EPErin K. Purcell
Erin K. Purcell
David E. ThompsonDavid E. Thompson
David E. Thompson
Kip A. LudwigKip A. Ludwig
Kip A. Ludwig
DKDaryl R. Kipke
Daryl R. Kipke

14 December 2015 in Journal of Neural Engineering
Verified
Journal Article
Closed access
KMKarlo A Malaga
Karlo A Malaga
KSKaren E Schroeder
Karen E Schroeder
PPParas R Patel
Paras R Patel
ZIZachary T Irwin
Zachary T Irwin
David E. ThompsonDavid E. Thompson
David E. Thompson
PPParag G Patil
Parag G Patil
Objective. We characterized electrode stability over twelve weeks of impedance and neural recording data from four chronically-implanted Utah arrays in two rhesus macaques, and investigated the effects of glial scarring and interface interactions at the electrode recording site on signal quality using a computational model. Approach. A finite-element model of a Utah array microelectrode in neural tissue was coupled with a multi-compartmental model of a neuron to quantify the effects of encapsulation thickness, encapsulation resistivity, and interface resistivity on electrode impedance and waveform amplitude. The coupled model was then reconciled with the in vivo data. Histology was obtained seventeen weeks post-implantation to measure gliosis. Main results. From week 1–3, mean impedance and amplitude increased at rates of 115.8 kΩ/week and 23.1 μ V/week, respectively. This initial ramp up in impedance and amplitude was observed across all arrays, and is consistent with biofouling (increasing interface resistivity) and edema clearing (increasing tissue resistivity), respectively, in the model. Beyond week 3, the trends leveled out. Histology showed that thin scars formed around the electrodes. In the model, scarring could not match the in vivo data. However, a thin interface layer at the electrode tip could. Despite having a large effect on impedance, interface resistivity did not have a noticeable effect on amplitude. Significance. This study suggests that scarring does not cause an electrical problem with regard to signal quality since it does not appear to be the main contributor to increasing impedance or significantly affect amplitude unless it displaces neurons. This, in turn, suggests that neural signals can be obtained reliably despite scarring as long as the recording site has sufficiently low impedance after accumulating a thin layer of biofouling. Therefore, advancements in microelectrode technology may be expedited by focusing on improvements to the recording site-tissue interface rather than elimination of the glial scar.