Feng Shi

Dr. Feng Shi


Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 April 2020 in IEEE Reviews in Biomedical Engineering
Verified
Journal Article
Closed access
FSFeng Shi
Feng Shi
JWJun Wang
Jun Wang
JSJun Shi
Jun Shi
ZWZiyan Wu
Ziyan Wu
QWQian Wang
Qian Wang
DSDinggang Shen
Dinggang Shen
The pandemic of coronavirus disease 2019 (COVID-19) is spreading all over the world. Medical imaging such as X-ray and computed tomography (CT) plays an essential role in the global fight against COVID-19, whereas the recently emerging artificial intelligence (AI) technologies further strengthen the power of the imaging tools and help medical specialists. We hereby review the rapid responses in the community of medical imaging (empowered by AI) toward COVID-19. For example, AI-empowered image acquisition can significantly help automate the scanning procedure and also reshape the workflow with minimal contact to patients, providing the best protection to the imaging technicians. Also, AI can improve work efficiency by accurate delineation of infections in X-ray and CT images, facilitating subsequent quantification. Moreover, the computer-aided platforms help radiologists make clinical decisions, i.e., for disease diagnosis, tracking, and prognosis. In this review paper, we thus cover the entire pipeline of medical imaging and analysis techniques involved with COVID-19, including image acquisition, segmentation, diagnosis, and follow-up. We particularly focus on the integration of AI with X-ray and CT, both of which are widely used in the frontline hospitals, in order to depict the latest progress of medical imaging and radiology fighting against COVID-19.

14 April 2011 in PLOS ONE
Verified
Journal Article
Open access
PDF file
FSFeng Shi
Feng Shi
PYPew-Thian Yap
Pew-Thian Yap
GWGuorong Wu
Guorong Wu
HJHongjun Jia
Hongjun Jia
JGJohn H. Gilmore
John H. Gilmore
DSDinggang Shen
Dinggang Shen
Studies for infants are usually hindered by the insufficient image contrast, especially for neonates. Prior knowledge, in the form of atlas, can provide additional guidance for the data processing such as spatial normalization, label propagation, and tissue segmentation. Although it is highly desired, there is currently no such infant atlas which caters for all these applications. The reason may be largely due to the dramatic early brain development, image processing difficulties, and the need of a large sample size. To this end, after several years of subject recruitment and data acquisition, we have collected a unique longitudinal dataset, involving 95 normal infants (56 males and 39 females) with MRI scanned at 3 ages, i.e., neonate, 1-year-old, and 2-year-old. State-of-the-art MR image segmentation and registration techniques were employed, to construct which include the templates (grayscale average images), tissue probability maps (TPMs), and brain parcellation maps (i.e., meaningful anatomical regions of interest) for each age group. In addition, the longitudinal correspondences between age-specific atlases were also obtained. Experiments of typical infant applications validated that the proposed atlas outperformed other atlases and is hence very useful for infant-related studies. We expect that the proposed infant 0–1–2 brain atlases would be significantly conducive to structural and functional studies of the infant brains. These atlases are publicly available in our website, http://bric.unc.edu/ideagroup/free-softwares/.

23 March 2009 in Hippocampus
Verified
Journal Article
Closed access
PDF file
FSFeng Shi
Feng Shi
BLBing Liu
Bing Liu
YZYuan Zhou
Yuan Zhou
CYChunshui Yu
Chunshui Yu
TJTianzi Jiang
Tianzi Jiang

1 November 2011 in Cerebral Cortex
Verified
Journal Article
Open access
PDF file
JGJohn H. Gilmore
John H. Gilmore
FSFeng Shi
Feng Shi
SWSandra L. Woolson
Sandra L. Woolson
RKRebecca C. Knickmeyer
Rebecca C. Knickmeyer
SSSarah J. Short
Sarah J. Short
DSDinggang Shen
Dinggang Shen
Very little is known about cortical development in the first years of life, a time of rapid cognitive development and risk for neurodevelopmental disorders. We studied regional cortical and subcortical gray matter volume growth in a group of 72 children who underwent magnetic resonance scanning after birth and at ages 1 and 2 years using a novel longitudinal registration/parcellation approach. Overall, cortical gray matter volumes increased substantially (106%) in the first year of life and less so in the second year (18%). We found marked regional differences in developmental rates, with primary motor and sensory cortices growing slower in the first year of life with association cortices growing more rapidly. In the second year of life, primary sensory regions continued to grow more slowly, while frontal and parietal regions developed relatively more quickly. The hippocampus grew less than other subcortical structures such as the amygdala and thalamus in the first year of life. It is likely that these patterns of regional gray matter growth reflect maturation and development of underlying function, as they are consistent with cognitive and functional development in the first years of life.

18 May 2020 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
XOXi Ouyang
Xi Ouyang
JHJiayu Huo
Jiayu Huo
LXLiming Xia
Liming Xia
FSFei Shan
Fei Shan
JLJun Liu
Jun Liu
DSDinggang Shen
Dinggang Shen
The coronavirus disease (COVID-19) is rapidly spreading all over the world, and has infected more than 1,436,000 people in more than 200 countries and territories as of April 9, 2020. Detecting COVID-19 at early stage is essential to deliver proper healthcare to the patients and also to protect the uninfected population. To this end, we develop a dual-sampling attention network to automatically diagnose COVID-19 from the community acquired pneumonia (CAP) in chest computed tomography (CT). In particular, we propose a novel online attention module with a 3D convolutional network (CNN) to focus on the infection regions in lungs when making decisions of diagnoses. Note that there exists imbalanced distribution of the sizes of the infection regions between COVID-19 and CAP, partially due to fast progress of COVID-19 after symptom onset. Therefore, we develop a dual-sampling strategy to mitigate the imbalanced learning. Our method is evaluated (to our best knowledge) upon the largest multi-center CT data for COVID-19 from 8 hospitals. In the training-validation stage, we collect 2186 CT scans from 1588 patients for a 5-fold cross-validation. In the testing stage, we employ another independent large-scale testing dataset including 2796 CT scans from 2057 patients. Results show that our algorithm can identify the COVID-19 images with the area under the receiver operating characteristic curve (AUC) value of 0.944, accuracy of 87.5%, sensitivity of 86.9%, specificity of 90.1%, and F1-score of 82.0%. With this performance, the proposed algorithm could potentially aid radiologists with COVID-19 diagnosis from CAP, especially in the early stage of the COVID-19 outbreak.

1 June 2015 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
FSFeng Shi
Feng Shi
JCJian Cheng
Jian Cheng
LWLi Wang
Li Wang
PYPew-Thian Yap
Pew-Thian Yap
DSDinggang Shen
Dinggang Shen
Image super-resolution (SR) aims to recover high-resolution images from their low-resolution counterparts for improving image analysis and visualization. Interpolation methods, widely used for this purpose, often result in images with blurred edges and blocking effects. More advanced methods such as total variation (TV) retain edge sharpness during image recovery. However, these methods only utilize information from local neighborhoods, neglecting useful information from remote voxels. In this paper, we propose a novel image SR method that integrates both local and global information for effective image recovery. This is achieved by, in addition to TV, low-rank regularization that enables utilization of information throughout the image. The optimization problem can be solved effectively via alternating direction method of multipliers (ADMM). Experiments on MR images of both adult and pediatric subjects demonstrate that the proposed method enhances the details in the recovered high-resolution images, and outperforms methods such as the nearest-neighbor interpolation, cubic interpolation, iterative back projection (IBP), non-local means (NLM), and TV-based up-sampling.