Jun Shi

Prof. Jun Shi


Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 April 2020 in IEEE Reviews in Biomedical Engineering
Verified
Journal Article
Closed access
FSFeng Shi
Feng Shi
JWJun Wang
Jun Wang
JSJun Shi
Jun Shi
ZWZiyan Wu
Ziyan Wu
QWQian Wang
Qian Wang
DSDinggang Shen
Dinggang Shen
The pandemic of coronavirus disease 2019 (COVID-19) is spreading all over the world. Medical imaging such as X-ray and computed tomography (CT) plays an essential role in the global fight against COVID-19, whereas the recently emerging artificial intelligence (AI) technologies further strengthen the power of the imaging tools and help medical specialists. We hereby review the rapid responses in the community of medical imaging (empowered by AI) toward COVID-19. For example, AI-empowered image acquisition can significantly help automate the scanning procedure and also reshape the workflow with minimal contact to patients, providing the best protection to the imaging technicians. Also, AI can improve work efficiency by accurate delineation of infections in X-ray and CT images, facilitating subsequent quantification. Moreover, the computer-aided platforms help radiologists make clinical decisions, i.e., for disease diagnosis, tracking, and prognosis. In this review paper, we thus cover the entire pipeline of medical imaging and analysis techniques involved with COVID-19, including image acquisition, segmentation, diagnosis, and follow-up. We particularly focus on the integration of AI with X-ray and CT, both of which are widely used in the frontline hospitals, in order to depict the latest progress of medical imaging and radiology fighting against COVID-19.

1 February 2021 in Medical Image Analysis
Verified
Journal Article
Closed access
Xing WuXing Wu
Xing Wu
CCCheng Chen
Cheng Chen
MZMingyu Zhong
Mingyu Zhong
Jianjia WangJianjia Wang
Jianjia Wang
JSJun Shi
Jun Shi

4 June 2018 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
JSJun Shi
Jun Shi
ZLZheng Li
Zheng Li
SYShihui Ying
Shihui Ying
CWChaofeng Wang
Chaofeng Wang
QLQingping Liu
Qingping Liu
PYPingkun Yan
Pingkun Yan
Spatial resolution is a critical imaging parameter in magnetic resonance imaging (MRI). The image super-resolution (SR) is an effective and cost efficient alternative technique to improve the spatial resolution of MR images. Over the past several years, the convolutional neural networks (CNN)-based SR methods have achieved state-of-the-art performance. However, CNNs with very deep network structures usually suffer from the problems of degradation and diminishing feature reuse, which add difficulty to network training and degenerate the transmission capability of details for SR. To address these problems, in this work, a progressive wide residual network with a fixed skip connection (named FSCWRN) based SR algorithm is proposed to reconstruct MR images, which combines the global residual learning and the shallow network based local residual learning. The strategy of progressive wide networks is adopted to replace deeper networks, which can partially relax the abovementioned problems, while a fixed skip connection helps provide rich local details at high frequencies from a fixed shallow layer network to subsequent networks. The experimental results on one simulated MR image database and three real MR image databases show the effectiveness of the proposed FSCWRN SR algorithm, which achieves improved reconstruction performance compared with other algorithms.

1 November 2020 in Neurocomputing
Verified
Journal Article
Closed access
XFXiaoyan Fei
Xiaoyan Fei
JWJun Wang
Jun Wang
SYShihui Ying
Shihui Ying
ZHZhongyi Hu
Zhongyi Hu
JSJun Shi
Jun Shi

8 May 2024 in Neural Networks
Verified
Journal Article
Closed access
Juncheng LiJuncheng Li
Juncheng Li
BCBodong Cheng
Bodong Cheng
YCYing Chen
Ying Chen
GGGuangwei Gao
Guangwei Gao
JSJun Shi
Jun Shi
TZTieyong ZENG
Tieyong ZENG

14 April 2020 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
JWJun Wang
Jun Wang
LZLichi Zhang
Lichi Zhang
QWQian Wang
Qian Wang
LCLei Chen
Lei Chen
JSJun Shi
Jun Shi
DSDinggang Shen
Dinggang Shen
The resting-state functional magnetic resonance imaging (rs-fMRI) reflects functional activity of brain regions by blood-oxygen-level dependent (BOLD) signals. Up to now, many computer-aided diagnosis methods based on rs-fMRI have been developed for Autism Spectrum Disorder (ASD). These methods are mostly the binary classification approaches to determine whether a subject is an ASD patient or not. However, the disease often consists of several sub-categories, which are complex and thus still confusing to many automatic classification methods. Besides, existing methods usually focus on the functional connectivity (FC) features in grey matter regions, which only account for a small portion of the rs-fMRI data. Recently, the possibility to reveal the connectivity information in the white matter regions of rs-fMRI has drawn high attention. To this end, we propose to use the patch-based functional correlation tensor (PBFCT) features extracted from rs-fMRI in white matter, in addition to the traditional FC features from gray matter, to develop a novel multi-class ASD diagnosis method in this work. Our method has two stages. Specifically, in the first stage of multi-source domain adaptation (MSDA), the source subjects belonging to multiple clinical centers (thus called as source domains) are all transformed into the same target feature space. Thus each subject in the target domain can be linearly reconstructed by the transformed subjects. In the second stage of multi-view sparse representation (MVSR), a multi-view classifier for multi-class ASD diagnosis is developed by jointly using both views of the FC and PBFCT features. The experimental results using the ABIDE dataset verify the effectiveness of our method, which is capable of accurately classifying each subject into a respective ASD sub-category.