John Clune

Mr. John Clune


Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 December 2020 in Water
Verified
Journal Article
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JCJohn Clune
John Clune
KCKent Crawford
Kent Crawford
EBElizabeth W. Boyer
Elizabeth W. Boyer
Nutrient enrichment is currently a leading cause of impairment to streams in Pennsylvania. Evaluating the water quality condition and eutrophic status of streams and rivers is a challenge without established thresholds for nutrient concentrations, which can vary depending on climate and landscape characteristics. The US Environmental Protection Agency (USEPA) has published nutrient criteria for nutrient ecoregions nationwide that are used as regional baseline values; and has encouraged states to develop more refined values if better data are available. In this study, we quantified long-term nutrient concentrations observed in streams and rivers across Pennsylvania using a robust water quality dataset compiled from monitoring data collected over the past two decades (2000–2019) by multiple agencies. We estimated nutrient criteria concentration thresholds for each ecoregion using USEPA’s percentile approach. The 25th percentile median concentrations observed in streams and rivers ranged from 0.27 to 2.30 mg/L for total nitrogen (TN), and from 0.010 to 0.053 mg/L for total phosphorus (TP). The percent of sites with available data that exceeded the 25th percentile was 53% for TN and 60% for TP, reflecting longstanding problems with nutrient pollution of rivers and streams in Pennsylvania. The 25th percentile may overestimate background condition levels, as nutrient conditions vary substantially within and among ecoregions. We compared our contemporary concentrations at the threshold values to other published recommended criteria for the region and explored the influence of landscape heterogeneity and seasonality on nutrient concentrations. The spatial and temporal variability of nutrient conditions emphasizes the importance of using percentile analysis as only a guide toward more robust response-based methods, rather than as a method for setting nutrient criteria in Pennsylvania. Our results provide environmental managers with new insights regarding the status of nutrient conditions in streams and rivers across Pennsylvania ecoregions toward further developing numeric nutrient criteria.

1 November 2020 in Environmental Research Communications
Verified
Journal Article
Open access
JCJohn Clune
John Clune
JCJ Kent Crawford
J Kent Crawford
WCWilliam T Chappell
William T Chappell
EBElizabeth W. Boyer
Elizabeth W. Boyer
Nutrient pollution of surface waters is a widespread problem, calling for regional assessments of water quality conditions. In this study, we quantified long-term median nutrient concentrations of total nitrogen (TN) and total phosphorus (TP) in streams and rivers of Pennsylvania and explored relationships between stream nutrient concentrations and the land use of their watersheds. Our analysis is based on a synthesis of monitoring data from multiple agencies that included records of nutrient concentrations observed between 2000–2019. Across the state, stream nutrient concentrations observed in predominantly undeveloped areas (e.g., forests, shrubs, and grasslands) have median concentration values of 0.42 mg l−1 for TN and 0.011 mg l−1 for TP, reflecting background concentrations for minimally impacted watersheds. Median stream concentrations of TN in agricultural areas are about eleven times higher than in undeveloped areas; and are about five times higher in developed areas than in undeveloped areas. Median stream concentrations of TP in developed areas have about eight times higher concentrations than undeveloped areas; and are about four times higher in agricultural areas than in undeveloped areas. Concentrations of TN and TP increased substantially as the combined percentage of agricultural and developed land use increased. Fragmented data storage practices (e.g. incomplete metadata, ambiguous site names, and missing coordinates) and inconsistencies in monitoring protocols (e.g., differences in constituents measured, parameter names, and measurement methods) made leveraging the secondary use of multiple sources of data challenging. Nonetheless, our integrated dataset is robust, represents the best data available, and provides a new window into the nutrient status of Pennsylvania’s surface waters. The long-term median nutrient concentrations reveal the magnitude of variability in TN and TP concentrations across the state’s diverse environmental settings of land use, physiography, and geology. This information is useful for interpreting additional monitoring data, informing evaluation of water quality conditions, and guiding watershed management.

1 January 2015
Verified
Report
Closed access
AGAllen C. Gellis
Allen C. Gellis
GNGregory Noe
Gregory Noe
JCJohn Clune
John Clune
MMMichael K. Myers
Michael K. Myers
CHCliff R. Hupp
Cliff R. Hupp
GSGregory E. Schwarz
Gregory E. Schwarz

1 January 2021
Verified
Report
Closed access
PDF file
JCJohn Clune
John Clune
PCPaul Capel
Paul Capel
Matthew MillerMatthew Miller
Matthew Miller
DBDouglas A. Burns
Douglas A. Burns
ASAndrew J. Sekellick
Andrew J. Sekellick
Qian ZhangQian Zhang
Qian Zhang
Sustaining the quality of the Nation’s water resources and the health of our diverse ecosystems depends on the availability of sound water-resources data and information to develop effective, science-based policies. Effective management of water resources also brings more certainty and efficiency to important economic sectors. Taken together, these actions lead to immediate and long-term economic, social, and environmental benefits that will make a difference to the lives of the almost 400 million people projected to live in the United States by 2050.The Chesapeake Bay is the largest and most productive estuary in the United States and is a vital environmental and economic resource. Approximately half of the water volume of the Chesapeake Bay originates from streams and rivers that drain the 64,243 mi2 Chesapeake Bay watershed. The Bay and its tributaries have been degraded by excessive nutrients, such as nitrogen, from contributing watersheds. Inputs of nitrogen to the Bay lead to increased algal growth, decreased dissolved oxygen, and declining fisheries. In 2000, the Chesapeake Bay was listed as impaired under the Clean Water Act and Total Maximum Daily Loads (TMDLs) for nutrients and sediment have been established to assist with management actions aimed at nutrient reductions. Effective nutrient management requires an understanding of past, present, and future nutrient sources, fate, and transport in the watershed.The Chesapeake Bay community has been a pioneer in science, management, and regulation to improve water quality. Factors like climate, hydrology, source inputs, and management controls play a vital role in determining the delivery and magnitude of nitrogen inputs to the Bay. Science in the form of monitoring data, predictive tools, and interpretive reports can help inform decisions to better balance the use and control of nitrogen in coastal areas. The findings in this report can contribute to effective management of the Bay and its watershed by providing a synthesis of the understanding of how human activities and environmental change in the watershed in the past, present, and future will influence the export of nitrogen to the Bay.We hope this publication will provide you with insights and information to meet your water resource needs and will foster increased civilian awareness and involvement in the protection and restoration of our Nation’s waters. The information in this report is intended primarily for those interested or involved in resource management and protection, conservation, regulation, and policymaking at the regional and national levels.

14 March 2024 in Jawra Journal of the American Water Resources Association
Verified
Journal Article
Open access
PDF file
JWJames Webber
James Webber
JCJeffrey Chanat
Jeffrey Chanat
JCJohn Clune
John Clune
ODOlivia Devereux
Olivia Devereux
NHNatalie Hall
Natalie Hall
Qian ZhangQian Zhang
Qian Zhang
Many agricultural watersheds rely on the voluntary use of management practices (MPs) to reduce nonpoint source nutrient and sediment loads; however, the water‐quality effects of MPs are uncertain. We interpreted water‐quality responses from as early as 1985 through 2020 in three agricultural Chesapeake Bay watersheds that were prioritized for MP implementation, namely, the Smith Creek (Virginia), Upper Chester River (Maryland), and Conewago Creek (Pennsylvania) watersheds. We synthesized patterns in MPs, climate, land use, and nutrient inputs to better understand factors affecting nutrient and sediment loads. Relations between MPs and expected water‐quality improvements were not consistently identifiable. The number of MPs increased in all watersheds since the early 2010s, but most monitored nutrient and sediment loads did not decrease. Nutrient and sediment loads increased or remained stable in Smith Creek and the Upper Chester River. Sediment loads and some nutrient loads decreased in Conewago Creek. In Smith Creek, a 36‐year time‐series model suggests that changes in manure affected flow‐normalized total nitrogen loads. We hypothesize that increases in nutrient applications may overshadow some expected MP effects. MPs might have stemmed further water‐quality degradation, but improvements in nutrient loads may rely on reducing manure and fertilizer applications. Our results highlight the importance of assessing MP performance with long‐term monitoring‐based studies.

1 January 2019
Verified
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JCJohn Clune
John Clune
CCCharles A. Cravotta
Charles A. Cravotta
Pennsylvania has the second highest number of residential wells of any state in the Nation with approximately 2.4 million residents that depend on groundwater for their domestic water supply. Despite the widespread reliance on groundwater in rural areas of the state, publicly available data to characterize the quality of private well water are limited. In Bradford County, more than half of the residents use groundwater from private domestic-supply wells as their primary drinking source. The quality of private well water is influenced by the regional and local setting, including the surrounding soil, geology, land use, household plumbing, and well construction. The groundwater used for domestic water supply in Bradford County is obtained primarily from shallow bedrock and from unconsolidated (glacial) deposits that overlie the bedrock. Historical land use has been predominately forested, agricultural, and residential, but more recently unconventional oil/gas development has been distributed throughout the landscape. Pennsylvania is one of only two states in the Nation without statewide water-well construction standards.To better assess the quality of groundwater used for drinking water supply in Bradford County, data for 72 domestic wells were collected and analyzed for a wide range of constituents that could be evaluated in relation to drinking water health standards, geology, land use, and other environmental factors. Groundwater samples were collected from May through August 2016 and analyzed for physical and chemical properties, including major ions, nutrients, trace elements, volatile organic compounds, ethylene and propylene glycol, alcohols, gross-alpha/beta-particle activity, uranium, radon-222, and dissolved gases. A subset of samples was analyzed for radium isotopes (radium-226 and -228) and for the isotopic composition of methane. This study was conducted by the U.S. Geological Survey in cooperation with the Northern Tier Regional Planning and Development Commission and is part of a regional effort to characterize groundwater in rural areas of Pennsylvania.Results of the 2016 study show that groundwater quality generally met most drinking-water standards. However, a percentage of samples failed to meet maximum contaminant levels (MCLs) for total coliform bacteria (49.3 percent), Escherichia coli (8.5 percent), barium (2.8 percent), and arsenic (2.8 percent); and secondary maximum contaminant levels (SMCL) for sodium (48.6 percent), manganese (30.6 percent), gross alpha and beta activity (16.7 percent), iron (11.1 percent), pH (8.3 percent), total dissolved solids (5.6 percent), chloride (1.4 percent), and aluminum (1.4 percent). Radon-222 activities exceeded the proposed drinking-water standard of 300 picocuries per liter (pCi/L) in 70.4 percent of the samples. There were no exceedances of drinking water health standards for any volatile organic compounds, and the only detections were for three trihalomethanes in one sample.The pH of the groundwater had a large influence on chemical characteristics and ranged from 6.18 to 9.31. Generally, the higher pH samples had higher potential for elevated concentrations of several constituents, including total dissolved solids, sodium, lithium, chloride, fluoride, boron, arsenic, and methane. For the Bradford County well-water samples, calcium/bicarbonate type waters were most abundant, with others classified as sodium/bicarbonate or mixed water types including calcium-sodium/bicarbonate, calcium-sodium/bicarbonate-chloride, sodium/bicarbonate-chloride, sodium/bicarbonate-sulfate, or sodium/chloride types. Six principal components (pH, redox, hardness, chloride-bromide, strontium-barium, and molybdenum-arsenic) explained nearly 78.3 percent of the variance in the groundwater dataset.Groundwater from 12.5 percent of the wells had concentrations of methane greater than the Pennsylvania action level of 7 milligrams per liter (mg/L); detectable methane concentrations ranged from 0.01 to 77 mg/L. In addition, low levels of ethane (as much as 0.13 mg/L) were present in seven samples with the highest methane concentrations. The isotopic composition of methane in five of these groundwater samples was consistent with the isotopic compositions reported for mud-gas logging samples from these geologic units and a thermogenic source. Isotopic composition from a sixth sample suggested the methane in that sample may be of microbial origin. Well-water samples with the higher methane concentrations also had higher pH values and elevated concentrations of sodium, lithium, boron, fluoride, arsenic, and bromide. Relatively elevated concentrations of some other constituents, such as barium and chloride, commonly were present in, but not limited to, those well-water samples with elevated methane.Four of the six groundwater samples with the highest methane concentrations had chloride/bromide ratios that indicate mixing with a small amount of brine (0.02 percent or less) similar in composition to those reported for gas and oil well brines in Pennsylvania. In several other eastern Pennsylvania counties where gas drilling is absent, groundwater with comparable chloride/bromide ratios and chloride concentrations have been reported, implying a potential natural source of brine. The majority of Bradford County well-water samples, including the samples with the highest chloride concentrations, have chloride/bromide ratios that indicate predominantly anthropogenic sources of chloride, such as road-deicing salt or septic effluent. Brines that are naturally present may originate from deeper parts of the aquifer system, whereas anthropogenic sources are more likely to affect shallow groundwater because they occur on or near the land surface.The available data for this study indicate that no one physical factor, such as the topographic setting, well depth, or altitude at the bottom of the well, was particularly useful for predicting those well locations with an...