A critical procedure in diagnosing atrial fibrillation is the creation of electro-anatomic activation maps. Current methods generate these mappings from interpolation using a few sparse data points recorded inside the atria; they neither include prior knowledge of the underlying physics nor uncertainty of these recordings. Here we propose a physics-informed neural network for cardiac activation mapping that accounts for the underlying wave propagation dynamics and we quantify the epistemic uncertainty associated with these predictions. These uncertainty estimates not only allow us to quantify the predictive error of the neural network, but also help to reduce it by judiciously selecting new informative measurement locations via active learning. We illustrate the potential of our approach using a synthetic benchmark problem and a personalized electrophysiology model of the left atrium. We show that our new method outperforms linear interpolation and Gaussian process regression for the benchmark problem and linear interpolation at clinical densities for the left atrium. In both cases, the active learning algorithm achieves lower error levels than random allocation. Our findings open the door toward physics-based electro-anatomic mapping with the ultimate goals to reduce procedural time and improve diagnostic predictability for patients affected by atrial fibrillation. Open source code is available at https://github.com/fsahli/EikonalNet.
1 December 2019 in Computer Methods in Applied Mechanics and Engineering
The hydraulic behavior of the renal compartment is poorly understood. In particular, the role of the renal capsule on the intrarenal pressure has not been thoroughly addressed to date. We hypothesized that pressure and volume in the renal compartment are not linearly related, similar to other body compartments. The pressure-volume curve of the renal compartment was obtained by injecting fluid into the renal pelvis and recording the rise in intrarenal pressure in six anesthetized and mechanically ventilated piglets, using a catheter Camino 4B® inserted into the renal parenchyma. In healthy kidneys, pressure has a highly nonlinear dependence on the injected volume, as revealed by an exponential fit to the data (R2 = 0.92). On the contrary, a linear relation between pressure and volume is observed in decapsulated kidneys. We propose a biomechanical model for the renal capsule that is able to explain the nonlinear pressure-volume dependence for moderate volume increases. We have presented experimental evidence and a theoretical model that supports the existence of a renal compartment. The mechanical role of the renal capsule investigated in this work may have important implications in elucidating the role of decompressive capsulotomy in reducing the intrarenal pressure in acutely injured kidneys.
18 March 2017 in Biomechanics and Modeling in Mechanobiology