Daria Melnikova

Dr. Daria Melnikova

IBCh RAS
orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
15 June 2016 in Acta Naturae
Verified
Journal Article
Open access
PDF file
EFE. I. Finkina
E. I. Finkina
Daria MelnikovaDaria Melnikova
Daria Melnikova
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
Among a variety of molecular factors of the plant innate immune system, small proteins that transfer lipids and exhibit a broad spectrum of biological activities are of particular interest. These are lipid transfer proteins (LTPs). LTPs are interesting to researchers for three main features. The first feature is the ability of plant LTPs to bind and transfer lipids, whereby these proteins got their name and were combined into one class. The second feature is that LTPs are defense proteins that are components of plant innate immunity. The third feature is that LTPs constitute one of the most clinically important classes of plant allergens. In this review, we summarize the available data on the plant LTP structure, biological properties, diversity of functions, mechanisms of action, and practical applications, emphasizing their role in plant physiology and their significance in human life.

30 April 2016 in BMC Plant Biology
Verified
Journal Article
Open access
PDF file
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
Zakhar O. ShenkarevZakhar O. Shenkarev
Zakhar O. Shenkarev
EFEkaterina I. Finkina
Ekaterina I. Finkina
Daria MelnikovaDaria Melnikova
Daria Melnikova
EREugene I. Rumynskiy
Eugene I. Rumynskiy
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
Plant lipid transfer proteins (LTPs) assemble a family of small (7–9 kDa) ubiquitous cationic proteins with an ability to bind and transport lipids as well as participate in various physiological processes including defense against phytopathogens. They also form one of the most clinically relevant classes of plant allergens. Nothing is known to date about correlation between lipid-binding and IgE-binding properties of LTPs. The garden pea Pisum sativum is widely consumed crop and important allergenic specie of the legume family. This work is aimed at isolation of a novel LTP from pea seeds and characterization of its structural, functional, and allergenic properties. Three novel lipid transfer proteins, designated as Ps-LTP1-3, were found in the garden pea Pisum sativum, their cDNA sequences were determined, and mRNA expression levels of all the three proteins were measured at different pea organs. Ps-LTP1 was isolated for the first time from the pea seeds, and its complete amino acid sequence was determined. The protein exhibits antifungal activity and is a membrane-active compound that causes a leakage from artificial liposomes. The protein binds various lipids including bioactive jasmonic acid. Spatial structure of the recombinant uniformly 13C,15N-labelled Ps-LTP1 was solved by heteronuclear NMR spectroscopy. In solution the unliganded protein represents the mixture of two conformers (relative populations ~ 85:15) which are interconnected by exchange process with characteristic time ~ 100 ms. Hydrophobic residues of major conformer form a relatively large internal tunnel-like lipid-binding cavity (van der Waals volume comes up to ~1000 Å3). The minor conformer probably corresponds to the protein with the partially collapsed internal cavity. For the first time conformational heterogeneity in solution was shown for an unliganded plant lipid transfer protein. Heat denaturation profile and simulated gastrointestinal digestion assay showed that Ps-LTP1 displayed a high thermal and digestive proteolytic resistance proper for food allergens. The reported structural and immunological findings seem to describe Ps-LTP1 as potential cross-reactive allergen in LTP-sensitized patients, mostly Pru p 3+ ones. Similarly to allergenic LTPs the potential IgE-binding epitope of Ps-LTP1 is located near the proposed entrance into internal cavity and could be involved in lipid-binding.

4 July 2017 in Current Medicinal Chemistry
Verified
Journal Article
Closed access
EFEkaterina I. Finkina
Ekaterina I. Finkina
Daria MelnikovaDaria Melnikova
Daria Melnikova
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
Pathogenesis-related (PR) proteins are components of innate immunity system in plants. They play an important role in plant defense against pathogens. Lipid transfer proteins (LTPs) and Bet v 1 homologs comprise of two separate families of PR-proteins. Both LTPs (PR-14) and Bet v 1 homologs (PR-10) are multifunctional small proteins involving in plant response to abiotic and biotic stress conditions. The representatives of these PR-protein families do not show any sequence similarity but have other common biochemical features such as low molecular masses, the presence of hydrophobic cavities, ligand binding properties, and antimicrobial activities. Besides, many members of PR-10 and PR-14 families are ubiquitous plant panallergens which are able to cause sensitization of human immune system and crossreactive allergic reactions to plant food and pollen. This review is aimed at comparative analysis of structure-functional and allergenic properties of the PR-10 and PR-14 families, as well as prospects for their medicinal application.

16 March 2017 in Biochemistry
Verified
Journal Article
Closed access
ZSZakhar O. Shenkarev
Zakhar O. Shenkarev
Daria MelnikovaDaria Melnikova
Daria Melnikova
EFEkaterina I. Finkina
Ekaterina I. Finkina
SSStanislav V. Sukhanov
Stanislav V. Sukhanov
IBIvan A. Boldyrev
Ivan A. Boldyrev
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova

1 October 2013 in Biochemical and Biophysical Research Communications
Verified
Journal Article
Closed access
AGAlbina K. Gizatullina
Albina K. Gizatullina
EFEkaterina I. Finkina
Ekaterina I. Finkina
KMKonstantin S Mineev
Konstantin S Mineev
Daria MelnikovaDaria Melnikova
Daria Melnikova
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova

20 December 2022 in Membranes
Verified
Journal Article
Open access
PDF file
Daria MelnikovaDaria Melnikova
Daria Melnikova
Ekaterina FinkinaEkaterina Finkina
Ekaterina Finkina
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
ATAndrey A. Tagaev
Andrey A. Tagaev
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
In plants, lipid trafficking within and inside the cell is carried out by lipid-binding and transfer proteins. Ligands for these proteins are building and signaling lipid molecules, secondary metabolites with different biological activities due to which they perform diverse functions in plants. Many different classes of such lipid-binding and transfer proteins have been found, but the most common and represented in plants are lipid transfer proteins (LTPs), pathogenesis-related class 10 (PR-10) proteins, acyl-CoA-binding proteins (ACBPs), and puroindolines (PINs). A low degree of amino acid sequence homology but similar spatial structures containing an internal hydrophobic cavity are common features of these classes of proteins. In this review, we summarize the latest known data on the features of these protein classes with particular focus on their ability to bind and transfer lipid ligands. We analyzed the structural features of these proteins, the diversity of their possible ligands, the key amino acids participating in ligand binding, the currently known mechanisms of ligand binding and transferring, as well as prospects for possible application.