Ivan Bogdanov

Dr. Ivan Bogdanov

M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Russia, 117997, Moscow, st. Miklukho-Maklaya, 16/10
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Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 June 2016 in Acta Naturae
Verified
Journal Article
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EFE. I. Finkina
E. I. Finkina
Daria MelnikovaDaria Melnikova
Daria Melnikova
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
Among a variety of molecular factors of the plant innate immune system, small proteins that transfer lipids and exhibit a broad spectrum of biological activities are of particular interest. These are lipid transfer proteins (LTPs). LTPs are interesting to researchers for three main features. The first feature is the ability of plant LTPs to bind and transfer lipids, whereby these proteins got their name and were combined into one class. The second feature is that LTPs are defense proteins that are components of plant innate immunity. The third feature is that LTPs constitute one of the most clinically important classes of plant allergens. In this review, we summarize the available data on the plant LTP structure, biological properties, diversity of functions, mechanisms of action, and practical applications, emphasizing their role in plant physiology and their significance in human life.

30 April 2016 in BMC Plant Biology
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Journal Article
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Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
Zakhar O. ShenkarevZakhar O. Shenkarev
Zakhar O. Shenkarev
EFEkaterina I. Finkina
Ekaterina I. Finkina
Daria MelnikovaDaria Melnikova
Daria Melnikova
EREugene I. Rumynskiy
Eugene I. Rumynskiy
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
Plant lipid transfer proteins (LTPs) assemble a family of small (7–9 kDa) ubiquitous cationic proteins with an ability to bind and transport lipids as well as participate in various physiological processes including defense against phytopathogens. They also form one of the most clinically relevant classes of plant allergens. Nothing is known to date about correlation between lipid-binding and IgE-binding properties of LTPs. The garden pea Pisum sativum is widely consumed crop and important allergenic specie of the legume family. This work is aimed at isolation of a novel LTP from pea seeds and characterization of its structural, functional, and allergenic properties. Three novel lipid transfer proteins, designated as Ps-LTP1-3, were found in the garden pea Pisum sativum, their cDNA sequences were determined, and mRNA expression levels of all the three proteins were measured at different pea organs. Ps-LTP1 was isolated for the first time from the pea seeds, and its complete amino acid sequence was determined. The protein exhibits antifungal activity and is a membrane-active compound that causes a leakage from artificial liposomes. The protein binds various lipids including bioactive jasmonic acid. Spatial structure of the recombinant uniformly 13C,15N-labelled Ps-LTP1 was solved by heteronuclear NMR spectroscopy. In solution the unliganded protein represents the mixture of two conformers (relative populations ~ 85:15) which are interconnected by exchange process with characteristic time ~ 100 ms. Hydrophobic residues of major conformer form a relatively large internal tunnel-like lipid-binding cavity (van der Waals volume comes up to ~1000 Å3). The minor conformer probably corresponds to the protein with the partially collapsed internal cavity. For the first time conformational heterogeneity in solution was shown for an unliganded plant lipid transfer protein. Heat denaturation profile and simulated gastrointestinal digestion assay showed that Ps-LTP1 displayed a high thermal and digestive proteolytic resistance proper for food allergens. The reported structural and immunological findings seem to describe Ps-LTP1 as potential cross-reactive allergen in LTP-sensitized patients, mostly Pru p 3+ ones. Similarly to allergenic LTPs the potential IgE-binding epitope of Ps-LTP1 is located near the proposed entrance into internal cavity and could be involved in lipid-binding.

4 July 2017 in Current Medicinal Chemistry
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Journal Article
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EFEkaterina I. Finkina
Ekaterina I. Finkina
Daria MelnikovaDaria Melnikova
Daria Melnikova
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
Pathogenesis-related (PR) proteins are components of innate immunity system in plants. They play an important role in plant defense against pathogens. Lipid transfer proteins (LTPs) and Bet v 1 homologs comprise of two separate families of PR-proteins. Both LTPs (PR-14) and Bet v 1 homologs (PR-10) are multifunctional small proteins involving in plant response to abiotic and biotic stress conditions. The representatives of these PR-protein families do not show any sequence similarity but have other common biochemical features such as low molecular masses, the presence of hydrophobic cavities, ligand binding properties, and antimicrobial activities. Besides, many members of PR-10 and PR-14 families are ubiquitous plant panallergens which are able to cause sensitization of human immune system and crossreactive allergic reactions to plant food and pollen. This review is aimed at comparative analysis of structure-functional and allergenic properties of the PR-10 and PR-14 families, as well as prospects for their medicinal application.

16 June 2022 in Frontiers in Molecular Biosciences
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Journal Article
Open access
SGSvetlana V. Guryanova
Svetlana V. Guryanova
EFEkaterina I. Finkina
Ekaterina I. Finkina
DMDaria N. Melnikova
Daria N. Melnikova
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
BBBarbara Bohle
Barbara Bohle
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova
Plant pollen is one of the main sources of allergens causing allergic diseases such as allergic rhinitis and asthma. Several allergens in plant pollen are panallergens which are also present in other allergen sources. As a result, sensitized individuals may also experience food allergies. The mechanism of sensitization and development of allergic inflammation is a consequence of the interaction of allergens with a large number of molecular factors that often are acting in a complex with other compounds, for example low-molecular-mass ligands, which contribute to the induction a type 2-driven response of immune system. In this review, special attention is paid not only to properties of allergens but also to an important role of their interaction with lipids and other hydrophobic molecules in pollen sensitization. The reactions of epithelial cells lining the nasal and bronchial mucosa and of other immunocompetent cells will also be considered, in particular the mechanisms of the activation of B and T lymphocytes and the formation of allergen-specific antibody responses.

1 October 2013 in Biochemical and Biophysical Research Communications
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AGAlbina K. Gizatullina
Albina K. Gizatullina
EFEkaterina I. Finkina
Ekaterina I. Finkina
KMKonstantin S Mineev
Konstantin S Mineev
Daria MelnikovaDaria Melnikova
Daria Melnikova
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
TOTatiana V. Ovchinnikova
Tatiana V. Ovchinnikova

8 December 2022 in Allergy
Verified
Journal Article
Open access
DPDominika Polak
Dominika Polak
UVUte Vollmann
Ute Vollmann
JGJoao Grilo
Joao Grilo
Ivan BogdanovIvan Bogdanov
Ivan Bogdanov
LALorenz Aglas
Lorenz Aglas
BBBarbara Bohle
Barbara Bohle
Background: In birch‐dominated areas, allergies to pollen from trees of the order Fagales are considered to be initiated by the major birch pollen allergen Bet v 1. However, the sensitizing activity of Bet v 1‐homologs in Fagales pollen might be underestimated. Allergen‐specific T‐cells are crucial in the sensitization process. The T‐cell response to major allergens from alder, hazel, oak, hornbeam, chestnut, beech, and chestnut pollen has not yet been analyzed. Here, we characterized the cellular cross‐reactivity of major allergens in Fagales pollen with Bet v 1.Methods: T‐cell‐lines (TCL) were established from allergic individuals with Aln g 1, Car b 1, Ost c 1, Cor a 1, Fag s 1, Cas s 1, and Que a 1, and tested for reactivity with Bet v 1 and synthetic overlapping 12‐mer peptides representing its primary sequence. Aln g 1‐specific TCL was additionally tested with Aln g 1‐derived peptides and all allergens. IgE‐competition experiments with Aln g 1 and Bet v 1 were performed.Results: T‐cell‐lines initiated with Fagales pollen allergens varied strongly in their reactivity with Bet v 1 and by the majority responded stronger to the original stimulus. Cross‐reactivity was mostly restricted to the epitope Bet v 1142–153. No distinct cross‐reactivity of Aln g 1‐specific T‐cells with Bet v 1 was detected. Among 22 T‐cell epitopes, Aln g 1 contained two immunodominant epitopes. Bet v 1 inhibited IgE‐binding to Aln g 1 less potently than Aln g 1 itself.Conclusion: The cellular cross‐reactivity of major Fagales pollen allergens with Bet v 1 was unincisive, particularly for Aln g 1, most akin to Bet v 1. Our results indicate that humoral and cellular responses to these allergens are not predominantly based on cross‐reactivity with the major birch pollen allergen but suggest a Bet v 1‐independent sensitization in individuals from birch tree‐dominated areas.