The problem of classifying an image into different homogeneous regions is viewed as the task of clustering the pixels in the intensity space. In particular, satellite images contain landcover types, some of which cover significantly large areas while some (e.g., bridges and roads) occupy relatively much smaller regions. Automatically detecting regions or clusters of such widely varying sizes is a challenging task. In this paper, a new real-coded modified differential evolution based automatic fuzzy clustering algorithm is proposed which automatically evolves the number of clusters as well as the proper partitioning from a data set. Here, the assignment of points to different clusters is done based on a Xie-Beni index where the Euclidean distance is taken into consideration. The effectiveness of the proposed technique is first demonstrated for two numeric remote sensing data described in terms of feature vectors and then in identifying different landcover regions in remote sensing imagery. The superiority of the new method is demonstrated by comparing it with other existing techniques like automatic clustering using improved differential evolution, classical differential evolution based automatic fuzzy clustering, variable length genetic algorithm based fuzzy clustering, and well known fuzzy C-means algorithm both qualitatively and quantitatively.
In this article, we categorize presently available experimental and theoretical knowledge of various physicochemical and biochemical features of amino acids, as collected in the AAindex database of known 544 amino acid (AA) indices. Previously reported 402 indices were categorized into six groups using hierarchical clustering technique and 142 were left unclustered. However, due to the increasing diversity of the database these indices are overlapping, therefore crisp clustering method may not provide optimal results. Moreover, in various large-scale bioinformatics analyses of whole proteomes, the proper selection of amino acid indices representing their biological significance is crucial for efficient and error-prone encoding of the short functional sequence motifs. In most cases, researchers perform exhaustive manual selection of the most informative indices. These two facts motivated us to analyse the widely used AA indices. The main goal of this article is twofold. First, we present a novel method of partitioning the bioinformatics data using consensus fuzzy clustering, where the recently proposed fuzzy clustering techniques are exploited. Second, we prepare three high quality subsets of all available indices. Superiority of the consensus fuzzy clustering method is demonstrated quantitatively, visually and statistically by comparing it with the previously proposed hierarchical clustered results. The processed AAindex1 database, supplementary material and the software are available at http://sysbio.icm.edu.pl/aaindex/.