Sergey Alkhovsky

Sergey Alkhovsky

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 May 2019 in Archives of Virology
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Journal Article
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AAAbulikemu Abudurexiti
Abulikemu Abudurexiti
SAScott Adkins
Scott Adkins
DADaniela Alioto
Daniela Alioto
SASergey Alkhovsky
Sergey Alkhovsky
TATatjana Avsic-Zupanc
Tatjana Avsic-Zupanc
Jens H. KuhnJens H. Kuhn
Jens H. Kuhn

25 November 2015 in Archives of Virology
Verified
Journal Article
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Jens H. KuhnJens H. Kuhn
Jens H. Kuhn
MLMichael Lauck
Michael Lauck
ABAdam Bailey
Adam Bailey
ASAlexey Shchetinin
Alexey Shchetinin
TVTatyana V. Vishnevskaya
Tatyana V. Vishnevskaya
TGTony Goldberg
Tony Goldberg
The family Arteriviridae presently includes a single genus Arterivirus. This genus includes four species as the taxonomic homes for equine arteritis virus (EAV), lactate dehydrogenase-elevating virus (LDV), porcine respiratory and reproductive syndrome virus (PRRSV), and simian hemorrhagic fever virus (SHFV), respectively. A revision of this classification is urgently needed to accommodate the recent description of eleven highly divergent simian arteriviruses in diverse African nonhuman primates, one novel arterivirus in an African forest giant pouched rat, and a novel arterivirus in common brushtails in New Zealand. In addition, the current arterivirus nomenclature is not in accordance with the most recent version of the International Code of Virus Classification and Nomenclature. Here we outline an updated, amended, and improved arterivirus taxonomy based on current data. Taxon-specific sequence cut-offs are established relying on a newly established open reading frame 1b phylogeny and pairwise sequence comparison (PASC) of coding-complete arterivirus genomes. As a result, the current genus Arterivirus is replaced by five genera: Equartevirus (for EAV), Rodartevirus (LDV + PRRSV), Simartevirus (SHFV + simian arteriviruses), Nesartevirus (for the arterivirus from forest giant pouched rats), and Dipartevirus (common brushtail arterivirus). The current species Porcine reproductive and respiratory syndrome virus is divided into two species to accommodate the clear divergence of the European and American “types” of PRRSV, both of which now receive virus status. The current species Simian hemorrhagic fever virus is divided into nine species to accommodate the twelve known simian arteriviruses. Non-Latinized binomial species names are introduced to replace all current species names to clearly differentiate them from virus names, which remain largely unchanged.

3 February 2022 in Nature
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Journal Article
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TSTyler N. Starr
Tyler N. Starr
SZSamantha K. Zepeda
Samantha K. Zepeda
AWAlexandra C. Walls
Alexandra C. Walls
AGAllison J. Greaney
Allison J. Greaney
SASergey Alkhovsky
Sergey Alkhovsky
JBJesse Bloom
Jesse Bloom
Two different sarbecoviruses have caused major human outbreaks in the past two decades1,2. Both of these sarbecoviruses, SARS-CoV-1 and SARS-CoV-2, engage ACE2 through the spike receptor-binding domain2–6. However, binding to ACE2 orthologues of humans, bats and other species has been observed only sporadically among the broader diversity of bat sarbecoviruses7–11. Here we use high-throughput assays12 to trace the evolutionary history of ACE2 binding across a diverse range of sarbecoviruses and ACE2 orthologues. We find that ACE2 binding is an ancestral trait of sarbecovirus receptor-binding domains that has subsequently been lost in some clades. Furthermore, we reveal that bat sarbecoviruses from outside Asia can bind to ACE2. Moreover, ACE2 binding is highly evolvable—for many sarbecovirus receptor-binding domains, there are single amino-acid mutations that enable binding to new ACE2 orthologues. However, the effects of individual mutations can differ considerably between viruses, as shown by the N501Y mutation, which enhances the human ACE2-binding affinity of several SARS-CoV-2 variants of concern12 but substantially decreases it for SARS-CoV-1. Our results point to the deep ancestral origin and evolutionary plasticity of ACE2 binding, broadening the range of sarbecoviruses that should be considered to have spillover potential.

4 September 2020 in Archives of Virology
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Journal Article
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Jens H. KuhnJens H. Kuhn
Jens H. Kuhn
SAScott Adkins
Scott Adkins
DADaniela Alioto
Daniela Alioto
SASergey Alkhovsky
Sergey Alkhovsky
GAGaya Amarasinghe
Gaya Amarasinghe
XZXueping Zhou
Xueping Zhou

21 April 2018 in Archives of Virology
Verified
Journal Article
Open access
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PMPiet Maes
Piet Maes
SASergey Alkhovsky
Sergey Alkhovsky
YBYiming Bao
Yiming Bao
MBMartin Beer
Martin Beer
MBMonica Birkhead
Monica Birkhead
Jens H. KuhnJens H. Kuhn
Jens H. Kuhn
In 2018, the family Arenaviridae was expanded by inclusion of 1 new genus and 5 novel species. At the same time, the recently established order Bunyavirales was expanded by 3 species. This article presents the updated taxonomy of the family Arenaviridae and the order Bunyavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV) and summarizes additional taxonomic proposals that may affect the order in the near future.

20 January 2019 in Archives of Virology
Verified
Journal Article
Open access
PDF file
PMPiet Maes
Piet Maes
SAScott Adkins
Scott Adkins
SASergey Alkhovsky
Sergey Alkhovsky
TATatjana Avsic-Zupanc
Tatjana Avsic-Zupanc
MBMatthew J. Ballinger
Matthew J. Ballinger
Jens H. KuhnJens H. Kuhn
Jens H. Kuhn
In October 2018, the order Bunyavirales was amended by inclusion of the family Arenaviridae, abolishment of three families, creation of three new families, 19 new genera, and 14 new species, and renaming of three genera and 22 species. This article presents the updated taxonomy of the order Bunyavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).